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Nocardia farcinica IFM 10152 (nfar0)
Gene : trpS
DDBJ      :trpS         putative tryptophanyl-tRNA synthetase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  182/199 : Viruses  0/175   --->[See Alignment]
c.26.1
:343 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->314 1m83A PDBj 4e-81 51.5 %
:RPS:PDB   11->314 2akeA PDBj 1e-66 17.6 %
:RPS:SCOP  14->341 1d2rA  c.26.1.1 * 2e-48 47.5 %
:HMM:SCOP  14->342 1d2rA_ c.26.1.1 * 3.5e-98 39.1 %
:RPS:PFM   11->293 PF00579 * tRNA-synt_1b 9e-45 44.2 %
:HMM:PFM   11->295 PF00579 * tRNA-synt_1b 1.4e-80 39.2 273/292  
:BLT:SWISS 10->342 SYW_CORGL e-122 64.0 %
:PROS 22->32|PS00178|AA_TRNA_LIGASE_I
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55781.1 GT:GENE trpS GT:PRODUCT putative tryptophanyl-tRNA synthetase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1038042..1039073 GB:FROM 1038042 GB:TO 1039073 GB:DIRECTION + GB:GENE trpS GB:PRODUCT putative tryptophanyl-tRNA synthetase GB:PROTEIN_ID BAD55781.1 LENGTH 343 SQ:AASEQ MSSPASAPAAERKQRVLSGIQPTSNSFHLGNYLGALQYWVGMQDDYDALYFIPDMHAITVAQEPKQLRARTRAAAAQLLAIGIDPKRSTLFVQSQVPQHAELAWVLSCITGFGEASRMTQFKDKSARHGADNATVGLFTYPVLMAADILLYRPHQVPVGEDQRQHLELTRNLAQRFNTRFKKTFVVPEAHIVKGTAKIYDLQDPTSKMSKSAASDAGLINLLDDPKVSAKKIRSAVTDTGREIRYDPDTKPGVSNLLVILGALTGTSLDTLERDYDGKGYGDLKSDVADALVEFVTPLQAQVREYLADQGELDRILAAGAERAREIAGNTLAQVYDRVGFLAR GT:EXON 1|1-343:0| BL:SWS:NREP 1 BL:SWS:REP 10->342|SYW_CORGL|e-122|64.0|333/345| PROS 22->32|PS00178|AA_TRNA_LIGASE_I|PDOC00161| SEG 66->80|qlrartraaaaqlla| SEG 315->328|ilaagaerareiag| BL:PDB:NREP 1 BL:PDB:REP 16->314|1m83A|4e-81|51.5|295/328| RP:PDB:NREP 1 RP:PDB:REP 11->314|2akeA|1e-66|17.6|289/373| RP:PFM:NREP 1 RP:PFM:REP 11->293|PF00579|9e-45|44.2|269/279|tRNA-synt_1b| HM:PFM:NREP 1 HM:PFM:REP 11->295|PF00579|1.4e-80|39.2|273/292|tRNA-synt_1b| GO:PFM:NREP 6 GO:PFM GO:0000166|"GO:nucleotide binding"|PF00579|IPR002305| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00579|IPR002305| GO:PFM GO:0005524|"GO:ATP binding"|PF00579|IPR002305| GO:PFM GO:0005737|"GO:cytoplasm"|PF00579|IPR002305| GO:PFM GO:0006412|"GO:translation"|PF00579|IPR002305| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00579|IPR002305| RP:SCP:NREP 1 RP:SCP:REP 14->341|1d2rA|2e-48|47.5|324/326|c.26.1.1| HM:SCP:REP 14->342|1d2rA_|3.5e-98|39.1|325/0|c.26.1.1|1/1|Nucleotidylyl transferase| OP:NHOMO 1246 OP:NHOMOORG 1093 OP:PATTERN -------------------------------------------------------------------- 1111211111111111111-11111111111111111111112112111111111112112121212222112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112221111112122222122222222222111121211111111111111211111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122111111111111111211111111111111111111111111111111111111112111112121111111111111111111111111111111111111111111111111111211111111111111111111111111111222122222221121222212222111111111111111111111111111221111111111111111111111111111111111112111111111111111111111111111111111112211111111111111111111111111111-1111111111121112211111111111-11111111111111111112221111221222222222222222111111111111111111111111111111111111211111111111111111111111111111111111112111121111111111111211211111222111111111111111111111111111111111111111111-11111111111111111111111111111111 1---111-1---11111111111111111111111111111111111111111111111111111111111111111--111111111-1211111---1111111-12121-11121111111211112A2-1121111111111111111111121212511111111512221111I111-111211311121112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 335 STR:RPRED 97.7 SQ:SECSTR ######HHHHTccEEEEEEEccccccccHHHHHHHHHHHHHHHHTccEEEEEcHHHHHHHcccHHHHHHHHHHHHHHHHTTTccTTcEEEEEHHHHHHHTTccHHHHHHHHHHHTccHHHHHHHHccccGTTccHHHHTHHHHHHGGGcGGGcHHEEEEGGGHHHHHHHHHHHHHTTEEccccEEEEEEEccccEcccccTTcccccccTTcGcGGGcccTTccHHHHHHHHHHHccccccHHHHcccTTTcHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTcc## DISOP:02AL 1-12, 197-218| PSIPRED cccccccHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHccEEEEEEEcHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //