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Nocardia farcinica IFM 10152 (nfar0)
Gene : truA
DDBJ      :truA         putative tRNA pseudouridine synthase
Swiss-Prot:TRUA_NOCFA   RecName: Full=tRNA pseudouridine synthase A;         EC=5.4.99.12;AltName: Full=tRNA-uridine isomerase I;AltName: Full=tRNA pseudouridylate synthase I;

Homologs  Archaea  31/68 : Bacteria  876/915 : Eukaryota  122/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:257 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->230 2nreA PDBj 1e-33 39.3 %
:RPS:PDB   2->239 1dj0A PDBj 5e-65 37.6 %
:RPS:SCOP  2->239 1dj0A  d.265.1.1 * 2e-65 37.6 %
:HMM:SCOP  1->247 1dj0A_ d.265.1.1 * 2.1e-68 42.3 %
:RPS:PFM   2->89 PF01416 * PseudoU_synth_1 1e-08 50.0 %
:HMM:PFM   2->89 PF01416 * PseudoU_synth_1 6.1e-10 43.5 69/105  
:HMM:PFM   131->230 PF01416 * PseudoU_synth_1 3e-21 29.3 99/105  
:BLT:SWISS 1->257 TRUA_NOCFA e-148 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55684.1 GT:GENE truA GT:PRODUCT putative tRNA pseudouridine synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 932027..932800 GB:FROM 932027 GB:TO 932800 GB:DIRECTION + GB:GENE truA GB:PRODUCT putative tRNA pseudouridine synthase GB:PROTEIN_ID BAD55684.1 LENGTH 257 SQ:AASEQ MGWARQPGLRTVQGVLEDALGKVLREPIQLTVAGRTDAGVHAEGQVAHFDTAAEFDGPQLVHRLARFLPKDVRVKRADVVPPDFDARFSAIRRHYVYRLTTAPYGAEPLAARSVVPCKSAVDVDAMRRASGLLLGLHDFAAFCRRREGATTVRELQRFDWERQGDLLLAHVSADAFCWSMVRSLVGAVLAVGEGRRSPEWVAGLLRETQRSSSVTVAPAHGLSLVAVDYPADDELAARNVQTREMRSAPAVEGCCGE GT:EXON 1|1-257:0| SW:ID TRUA_NOCFA SW:DE RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;AltName: Full=tRNA-uridine isomerase I;AltName: Full=tRNA pseudouridylate synthase I; SW:GN Name=truA; OrderedLocusNames=NFA_8390; SW:KW Complete proteome; Isomerase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->257|TRUA_NOCFA|e-148|100.0|257/257| GO:SWS:NREP 2 GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| BL:PDB:NREP 1 BL:PDB:REP 2->230|2nreA|1e-33|39.3|219/259| RP:PDB:NREP 1 RP:PDB:REP 2->239|1dj0A|5e-65|37.6|237/264| RP:PFM:NREP 1 RP:PFM:REP 2->89|PF01416|1e-08|50.0|78/112|PseudoU_synth_1| HM:PFM:NREP 2 HM:PFM:REP 2->89|PF01416|6.1e-10|43.5|69/105|PseudoU_synth_1| HM:PFM:REP 131->230|PF01416|3e-21|29.3|99/105|PseudoU_synth_1| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF01416|IPR020097| GO:PFM GO:0003723|"GO:RNA binding"|PF01416|IPR020097| GO:PFM GO:0009451|"GO:RNA modification"|PF01416|IPR020097| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF01416|IPR020097| RP:SCP:NREP 1 RP:SCP:REP 2->239|1dj0A|2e-65|37.6|237/264|d.265.1.1| HM:SCP:REP 1->247|1dj0A_|2.1e-68|42.3|246/264|d.265.1.1|1/1|Pseudouridine synthase| OP:NHOMO 1168 OP:NHOMOORG 1029 OP:PATTERN ------------------11-1111---111--1111------111111111111111111------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111-111111112211112-1111111-11111211111111111111111111111111111111111111111111111111111111111111111-111-2222222222222211111122211111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111321122222221211211222232111-321111111121111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111---1111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111112121111111111111111111222221211----1111111111111111111111111111111111111111111111-111111--111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111-11111111111111111111111111111111111111111111111111111--1111111111111111------11------1--1111111111111111 --111---2-1--1-11--------------------------------------1-1----1111111111-1-1111111111111---111111111---2121151211111122--22134212252-22211-121221-11212-1-22221----21---2191-1-1332B433122123-251212124 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 238 STR:RPRED 92.6 SQ:SECSTR #ccccTTccccHHHHHHHHHHHHHTccccEEEcccccTTcEEEEEEEEEEEcccccHHHHHHHHHHTccTTEEEEEEEEccTTccTTTTccEEEEEEEEEccccccccTTTTccEEccccccHHHHHHHHGGGcEEEEcGGGccTTcccccEEEEEEEEEEEETTEEEEEEEEccccTTHHHHHHHHHHHHHTTcccTTHHHHHHHHccGGGcccccccTTEEEEEEEccGGGcccccc################## DISOP:02AL 5-7| PSIPRED cccEEccccccHHHHHHHHHHHHHcccEEEEEEccccccHHHcccEEEEEEcccccHHHHHHHHHHHcccccEEEEEEEccccccccccccEEEEEEEEEccccccccccccEEEEEcccccHHHHHHHHHHHHcccccHHHHccccccccEEEEEEEEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccEEEEEEccccccHHccHHHHHHHcccccccccccc //