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Nocardia farcinica IFM 10152 (nfar0)
Gene : tyrS
DDBJ      :tyrS         putative tyrosyl-tRNA synthetase
Swiss-Prot:SYY_NOCFA    RecName: Full=Tyrosyl-tRNA synthetase;         EC=6.1.1.1;AltName: Full=Tyrosine--tRNA ligase;         Short=TyrRS;

Homologs  Archaea  0/68 : Bacteria  906/915 : Eukaryota  179/199 : Viruses  0/175   --->[See Alignment]
c.26.1d.66.1
:429 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->426 2janA PDBj e-149 71.1 %
:RPS:PDB   1->333 2akeA PDBj 3e-53 15.8 %
:RPS:PDB   365->408 1c05A PDBj 5e-05 27.3 %
:RPS:SCOP  2->321 1jiiA  c.26.1.1 * e-108 45.1 %
:RPS:SCOP  362->420 1jh3A  d.66.1.4 * 3e-09 33.9 %
:HMM:SCOP  2->325 1jilA_ c.26.1.1 * 6.1e-99 48.0 %
:HMM:SCOP  324->427 1jh3A_ d.66.1.4 * 2.5e-17 32.3 %
:RPS:PFM   36->317 PF00579 * tRNA-synt_1b 2e-26 37.2 %
:RPS:PFM   365->405 PF01479 * S4 6e-04 39.0 %
:HMM:PFM   31->325 PF00579 * tRNA-synt_1b 1e-84 40.6 283/292  
:HMM:PFM   364->401 PF01479 * S4 2.1e-07 34.2 38/48  
:BLT:SWISS 1->429 SYY_NOCFA 0.0 100.0 %
:PROS 41->51|PS00178|AA_TRNA_LIGASE_I
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56837.1 GT:GENE tyrS GT:PRODUCT putative tyrosyl-tRNA synthetase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2161897..2163186 GB:FROM 2161897 GB:TO 2163186 GB:DIRECTION + GB:GENE tyrS GB:PRODUCT putative tyrosyl-tRNA synthetase GB:PROTEIN_ID BAD56837.1 LENGTH 429 SQ:AASEQ MSGDIIDELTWRGLIAQSTDLDALRAALAAGPLTLYAGFDPTAASLHAGHLVPLLALKRFQRAGHRPIVLAGGATGLIGDPRDVGERTMNSSDTVAEWARRIRSQLERFVDLDDSPTGAVIVNNMDWTGPLSAVDFLRDIGKHFSVNVMLARDTVKRRLEGDGMSYTEFSYMLLQANDYVQLRRSFGCRLQVGGSDQWGNIIAGVELNRRLDGESVHALTVPLVTSADGKKFGKSTGGGSLWLDPEMTSPYAWYQYFVNTADADVVRYLRWFTFLDREELAELERATAERPHAREAQRRLAAEMTTLVHGEQHTRAVQLASQALFGRGDLRELDEATLGAALREAAGEGEVARVTPGEPATIVDLLVATGLAESRGAARRTVNEGGAAVNNQKIADPDWTPADGDYLHGRWLVVRRGKRNMAGVLRDGN GT:EXON 1|1-429:0| SW:ID SYY_NOCFA SW:DE RecName: Full=Tyrosyl-tRNA synthetase; EC=6.1.1.1;AltName: Full=Tyrosine--tRNA ligase; Short=TyrRS; SW:GN Name=tyrS; OrderedLocusNames=NFA_19910; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis; RNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->429|SYY_NOCFA|0.0|100.0|429/429| GO:SWS:NREP 7 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| PROS 41->51|PS00178|AA_TRNA_LIGASE_I|PDOC00161| SEG 21->35|ldalraalaagpltl| SEG 229->240|gkkfgkstgggs| SEG 275->290|ldreelaelerataer| SEG 335->355|eatlgaalreaagegevarvt| BL:PDB:NREP 1 BL:PDB:REP 5->426|2janA|e-149|71.1|418/419| RP:PDB:NREP 2 RP:PDB:REP 1->333|2akeA|3e-53|15.8|316/373| RP:PDB:REP 365->408|1c05A|5e-05|27.3|44/159| RP:PFM:NREP 2 RP:PFM:REP 36->317|PF00579|2e-26|37.2|261/279|tRNA-synt_1b| RP:PFM:REP 365->405|PF01479|6e-04|39.0|41/46|S4| HM:PFM:NREP 2 HM:PFM:REP 31->325|PF00579|1e-84|40.6|283/292|tRNA-synt_1b| HM:PFM:REP 364->401|PF01479|2.1e-07|34.2|38/48|S4| GO:PFM:NREP 7 GO:PFM GO:0000166|"GO:nucleotide binding"|PF00579|IPR002305| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00579|IPR002305| GO:PFM GO:0005524|"GO:ATP binding"|PF00579|IPR002305| GO:PFM GO:0005737|"GO:cytoplasm"|PF00579|IPR002305| GO:PFM GO:0006412|"GO:translation"|PF00579|IPR002305| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00579|IPR002305| GO:PFM GO:0003723|"GO:RNA binding"|PF01479|IPR002942| RP:SCP:NREP 2 RP:SCP:REP 2->321|1jiiA|e-108|45.1|317/319|c.26.1.1| RP:SCP:REP 362->420|1jh3A|3e-09|33.9|59/99|d.66.1.4| HM:SCP:REP 2->325|1jilA_|6.1e-99|48.0|321/323|c.26.1.1|1/1|Nucleotidylyl transferase| HM:SCP:REP 324->427|1jh3A_|2.5e-17|32.3|99/99|d.66.1.4|1/1|Alpha-L RNA-binding motif| OP:NHOMO 1183 OP:NHOMOORG 1085 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111121112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122222222122222211221222211121111111111111111111111111111111212111111111111111111111111111111111111111111111111111111111111221111111122222222222211221111211111111122111111111111111111111111111111111111111111111111111-111111111111111111121111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112211111112111111111111111111111-111111111111111111111111-111-11111111111111111111111222111111111111111111111111111111111111111111111111111111111111111111-11111111111111111222211111111111111111111111111122222221221111111-11111111111111111111111111111111-11111111111111111111111111111111 11--111-1-----111111111111111111111111-21111111111111111111111111111-1111111112111111111-11-11111111111111-121211111-11-11111111-151-11111111111-111--11141111212111111111612221111A1111111121111111211 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 428 STR:RPRED 99.8 SQ:SECSTR HHTccccHHHHTTcEEEEEcHHHHHHHHHTTccEEEEEEccccccccHHHHHHHHHHHHHHHHHTccEEEEcHEEEEcHHHGGGcHHHHHccccHHHHHHHHHHHHHHHHTTTccTTcEEEEEHHHHHTTccHHHHHHHHHHTccHHHHHHHTTHHHHcccTTccHHHHTHHHHHHGGHHHTTccccEEEEEEEGGGHHHHHHHHHHHHHTTcEEEEEcccccTTcccccccTTcGGGcccTTccccccHHHHHHHcccTTTTcHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHTccccccTTTTTTHHHHHHHHccEEEEccHHHccTTTTTTTTTcccccHHHHHHHHTTcEEETTEEcccTTccccTTEEEETTEEEEEcccccEEEEEEcc# DISOP:02AL 1-2, 155-159, 228-236| PSIPRED ccHHHHHHHHHcccEEEcccHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHccccEEEEcccccHHHHHHHHHHHHHcccccEEEEEcccEEccccccccccccccEEEEccccccHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHccccccHHHHHHHccccccHHHHHHHHHcccEEEccEEEcccccccccHHHHcccEEEEEEcccEEEEEEEEcc //