[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : uvrA
DDBJ      :uvrA         putative excision nuclease ABC subunit A
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  892/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.138.1c.37.1e.11.1
:982 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->923 2r6fB PDBj 0.0 61.0 %
:RPS:PDB   1->334 1bjtA PDBj 7e-74 11.3 %
:RPS:PDB   463->878 3dt2A PDBj 5e-27 8.1 %
:RPS:SCOP  16->357 1bgwA  e.11.1.1 * 7e-66 11.5 %
:RPS:SCOP  336->556 1f2t.1  c.37.1.12 * 2e-21 21.7 %
:RPS:SCOP  530->589 1g8yA  c.37.1.11 * 3e-04 13.0 %
:RPS:SCOP  711->805 1d4cA1  a.138.1.3 * 1e-20 15.2 %
:RPS:SCOP  805->887 1e69A  c.37.1.12 * 6e-17 28.0 %
:HMM:SCOP  1->563 1ii8.1 c.37.1.12 * 4e-40 24.0 %
:HMM:SCOP  484->919 1p9rA_ c.37.1.11 * 6.9e-53 30.4 %
:HMM:PFM   453->499 PF00005 * ABC_tran 3.9e-06 43.2 44/118  
:HMM:PFM   631->844 PF00005 * ABC_tran 3.1e-17 33.3 117/118  
:HMM:PFM   74->137 PF09856 * DUF2083 3.9e-05 30.2 63/156  
:BLT:SWISS 1->921 UVRA_MYCTU 0.0 83.9 %
:PROS 471->485|PS00211|ABC_TRANSPORTER_1
:PROS 813->827|PS00211|ABC_TRANSPORTER_1
:REPEAT 2|384->576|744->919
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56757.1 GT:GENE uvrA GT:PRODUCT putative excision nuclease ABC subunit A GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2087519..2090467 GB:FROM 2087519 GB:TO 2090467 GB:DIRECTION + GB:GENE uvrA GB:PRODUCT putative excision nuclease ABC subunit A GB:PROTEIN_ID BAD56757.1 LENGTH 982 SQ:AASEQ MIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTPHCPVCGHLIAKQTPQQIVDQVLEMPEGTKFQVLAPVVRTRKGEFVDLFDQLNTQGYSRVRVDGVVYPLTDPPKLKKQEKHDVEVVVDRLTVKPSSKQRLTDSIETALRLADGIVVLDFVDRDENAHDRERRFSERLACPNGHPLDIEDLEPRSFSFNSPYGACPDCAGLGIRKEVDPDLVVPDPELSLAEGAIAPWSRGQTAEYFTRLLTGLAEAIGFSMDTPWKDLPAKARKAVLEGSSDQVHVSYTNRYGRKRSYYADFEGVMPFLHRRMDNTESEQMKEHYEGYMRDIPCPVCKGARLRPEILAVTLAAGSEKKSIAEVSDLSIGDCSAFLNGLTLGEREAAIAGQVLKEVQARLGFLLDVGLEYLTLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLKNLGNTLIVVEHDEDTIRASDWVVDIGPLAGEHGGRVVHSGPYPDLLANTDSLTGAYLAGHKRIEVPMVRRPIDRKRKLTVVGATEHNLKGIDVSFPLGVLTSVTGVSGSGKSTLVNDILATVLANKLNGARQVPGRHTRVNGLDQLDKLVRVDQSPIGRTPRSNPATYTGVFDKIRTLFAATTEAKVRGYQPGRFSFNVKGGRCEACSGDGTLKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKTIAEVLDMPIEEAAEFFEPVTSIHRYLKTLVDVGLGYVRLGQPAPTLSGGEAQRVKLAAELQKRSAGRTIYILDEPTTGLHFEDIRKLLAVINGLVDKGNTVIVIEHNLDVIKTSDWVIDMGPEGGSGGGTVVAEGTPEDVAAVPDSYTGQFLKEVLAQAETAPAPKSAAAKKAAAKKAAAKKAAGESGTVKKRTVPAPPETAAAKRLARKAAALR GT:EXON 1|1-982:0| BL:SWS:NREP 1 BL:SWS:REP 1->921|UVRA_MYCTU|0.0|83.9|921/972| PROS 471->485|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 813->827|PS00211|ABC_TRANSPORTER_1|PDOC00185| NREPEAT 1 REPEAT 2|384->576|744->919| SEG 616->634|lgvltsvtgvsgsgkstlv| SEG 888->903|gpeggsgggtvvaegt| SEG 929->951|apapksaaakkaaakkaaakkaa| SEG 969->981|aaakrlarkaaal| BL:PDB:NREP 1 BL:PDB:REP 16->923|2r6fB|0.0|61.0|812/864| RP:PDB:NREP 2 RP:PDB:REP 1->334|1bjtA|7e-74|11.3|318/679| RP:PDB:REP 463->878|3dt2A|5e-27|8.1|407/621| HM:PFM:NREP 3 HM:PFM:REP 453->499|PF00005|3.9e-06|43.2|44/118|ABC_tran| HM:PFM:REP 631->844|PF00005|3.1e-17|33.3|117/118|ABC_tran| HM:PFM:REP 74->137|PF09856|3.9e-05|30.2|63/156|DUF2083| RP:SCP:NREP 5 RP:SCP:REP 16->357|1bgwA|7e-66|11.5|323/679|e.11.1.1| RP:SCP:REP 336->556|1f2t.1|2e-21|21.7|217/288|c.37.1.12| RP:SCP:REP 530->589|1g8yA|3e-04|13.0|54/242|c.37.1.11| RP:SCP:REP 711->805|1d4cA1|1e-20|15.2|92/102|a.138.1.3| RP:SCP:REP 805->887|1e69A|6e-17|28.0|82/263|c.37.1.12| HM:SCP:REP 1->563|1ii8.1|4e-40|24.0|321/370|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 484->919|1p9rA_|6.9e-53|30.4|260/401|c.37.1.11|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1284 OP:NHOMOORG 924 OP:PATTERN ------------------------11111111111---1111112111-1111-------------11 2341432222222211111-12111311111123333233122232132222333213112232322244322223221122111111222223222--2222324242311111111111111222222222222222221113111111111111111111111111111111111111112121111111122222221121122122111112211122113222222231111111111111132224223133112223322332112221111111111111222212222221111111111111111111111112221333234212135111111311111111122211111111111111423111111111113111111111111111111111-221221121111111111111211111111111111111212222221112111111111111--11111111111111111111111112222222222322222324322221222323221122222322232222211111111111111111122121211111111111111112211111114412111111111111111-11111111111111211112121111111111111111112--12222------11121111111111111-11-1111111111111111111111111111111111111111111111111-111111111111--1111111111111112111211111-111111112211121111111222212222111111111111111111111111111132222221111111111111111111111111111111-1-11111111111111111111111111111223 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------1----------1--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 927 STR:RPRED 94.4 SQ:SECSTR HTccccEEHHHHHHHHHHHTcccccccHHHHHHHHHcccTTccccccEEEEccccccTTTTcTEEEETcccGGGcEEEEcTTHHHHccGGGGGGccEEEEEEccccHHHHHHHHHHHHTTccccccccccTTcccEHEEEEETTEEEEEcEEEEEETTEEEEEEccTTccHHHHHHHHHHHHcccTTccccccEEEEcccccccEEEEccHHHEccHHHHHHHHHHcHHHHTTcEEEEEEcTTEEEEcTTccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHTTccccTTccHHHHHHHHHHTTccEEcTTccEEcccccccccTTTcccHHHHHHHHHHHHHcccEEEETTTEEEEEcHHHHHHHHHHccTTGGGcccccHEcccEEGGGccccTTcHHHHHHHHHHEEEHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHTccccccEEEccGGGHHHHHHHcccGGGcTTccHHHHHHHHHTHTcccHHHHHHccHHHHHHHHcHHHHHHHHHHHTccTcccccccccccccEEEEHHHEEccccccccccTTHHHHHHHHHHHHHHEEEHHHcccEEEEEEEEccEEcHHHHHHHTTcccEEEEEEccccccccccccTTccccGGGcEEEEEGGTEEEEEccccHHHHcTTTHHHHTHHHHHHHHHHTcEEEccEEEEccEEEcTTccEEEEEEEccTTccHHHHHTcEEEEcTTccEEEEccccEEEEEcTTccTTTcHHHHHHTTcccEEEccEEETTccEEcTTccccccTTccEEcTTccEEcTTcccHHHccccTTcEEEEEGGGcTTccTTTTcTTcEEEEEEEccccccEEEcccHHHHHHHHHHHHHETTEEEETTEEEEEEcHHHHHHHcHHHHHHHccGGGccHH####################################################### DISOP:02AL 66-69, 921-975| PSIPRED cEEEEccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEccEEEEccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEcHHHccccccccHHcccEEcccccccHHHHHHHHHHHHHHccccccccHHHccHHHHHHHccccccEEEEEEEccccccEEEEccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccHHHcEEEEEcEEccccHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHccEEEEEcccccccccEEEEEccHHHHHccccHHHHHHHcccccccccccccccccccEEEEEcccEEEEEccEEEEEccEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHccEEEEEcccccccccccHHHHHHHHHHHHHHHcccHHHHHHcccccEEEEEcccEEEEccccccEEEEEHHHccccEEEccccccccccHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHccEEEEEcccccccccEEEEEccHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHHHHcc //