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Nocardia farcinica IFM 10152 (nfar0)
Gene : uvrB
DDBJ      :uvrB         putative excision nuclease ABC subunit B
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  884/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
a.2.9b.7.1c.37.1
:721 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->623 1t5lA PDBj 0.0 60.9 %
:RPS:PDB   30->623 1d9xA PDBj e-126 58.9 %
:RPS:PDB   670->715 1e52A PDBj 2e-07 30.4 %
:RPS:SCOP  19->85 2yrbA1  b.7.1.1 * 6e-07 10.6 %
:RPS:SCOP  79->363 2b2nA1  c.37.1.19 * 3e-55 19.8 %
:RPS:SCOP  443->614 1c4oA2  c.37.1.19 * 4e-23 63.4 %
:RPS:SCOP  673->714 1qojA  a.2.9.1 * 1e-07 26.2 %
:HMM:SCOP  30->442 1d9xA1 c.37.1.19 * 1.8e-132 44.8 %
:HMM:SCOP  441->625 2eyqA5 c.37.1.19 * 2.4e-35 31.8 %
:HMM:SCOP  661->716 1e52A_ a.2.9.1 * 2.1e-09 41.1 %
:RPS:PFM   45->148 PF04851 * ResIII 7e-18 44.2 %
:RPS:PFM   493->571 PF00271 * Helicase_C 9e-06 39.2 %
:RPS:PFM   579->622 PF12344 * UvrB 1e-12 75.0 %
:HMM:PFM   579->622 PF12344 * UvrB 1.5e-24 70.5 44/44  
:HMM:PFM   494->572 PF00271 * Helicase_C 5.1e-17 44.6 74/78  
:HMM:PFM   43->148 PF04851 * ResIII 1.4e-12 25.5 106/184  
:HMM:PFM   678->711 PF02151 * UVR 4.8e-09 47.1 34/36  
:BLT:SWISS 28->720 UVRB_MYCTU 0.0 88.3 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56748.1 GT:GENE uvrB GT:PRODUCT putative excision nuclease ABC subunit B GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2075845..2078010 GB:FROM 2075845 GB:TO 2078010 GB:DIRECTION + GB:GENE uvrB GB:PRODUCT putative excision nuclease ABC subunit B GB:PROTEIN_ID BAD56748.1 LENGTH 721 SQ:AASEQ MAFATEIPAEGETPLAHSEFRPVGAIERAEGRFQVVSEHQPAGDQPAAIDELERRIKAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGTEVDRDALLRLLVDVQYTRNDLSFTRGSFRVRGDTVEIIPSYEELAVRIEFFGDEIEALYYLHPLTGDVVRKVDTLRIFPATHYVAGPDRMERAVRDIEQELEERLAELERQGKLLEAQRLRMRTQYDLEMIRQVGFCSGIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEYGFRLPSAVDNRPLTWEEFADRIGQVVYLSATPGPYELGRTGGEVVEQVIRPTGLVDPKVVVKPTKGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYLLGLGVRVRYLHSEIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAARNVSGEVHMYADKITDSMQFAIEETERRRAKQIAYNEKMGIDPKPLRKKIADILDQVYREADEVEVGGSGRNASRGRRAQGEPGRAVSAGVIEGRDVKSMPRAELADLVTELTAQMMNAARELQFELAGRLRDEIADLKKELRGMDAAGLS GT:EXON 1|1-721:0| BL:SWS:NREP 1 BL:SWS:REP 28->720|UVRB_MYCTU|0.0|88.3|693/698| COIL:NAA 38 COIL:NSEG 1 COIL:REGION 283->320| SEG 67->78|gatgtgksatta| SEG 156->171|ssllsrrdvvvvasvs| SEG 195->207|vdrdallrllvdv| SEG 291->304|eqeleerlaelerq| SEG 510->521|lrrvellrqlrl| SEG 637->649|ggsgrnasrgrra| BL:PDB:NREP 1 BL:PDB:REP 30->623|1t5lA|0.0|60.9|593/595| RP:PDB:NREP 2 RP:PDB:REP 30->623|1d9xA|e-126|58.9|589/590| RP:PDB:REP 670->715|1e52A|2e-07|30.4|46/56| RP:PFM:NREP 3 RP:PFM:REP 45->148|PF04851|7e-18|44.2|104/177|ResIII| RP:PFM:REP 493->571|PF00271|9e-06|39.2|74/76|Helicase_C| RP:PFM:REP 579->622|PF12344|1e-12|75.0|44/44|UvrB| HM:PFM:NREP 4 HM:PFM:REP 579->622|PF12344|1.5e-24|70.5|44/44|UvrB| HM:PFM:REP 494->572|PF00271|5.1e-17|44.6|74/78|Helicase_C| HM:PFM:REP 43->148|PF04851|1.4e-12|25.5|106/184|ResIII| HM:PFM:REP 678->711|PF02151|4.8e-09|47.1|34/36|UVR| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF04851|IPR006935| GO:PFM GO:0005524|"GO:ATP binding"|PF04851|IPR006935| GO:PFM GO:0016787|"GO:hydrolase activity"|PF04851|IPR006935| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 4 RP:SCP:REP 19->85|2yrbA1|6e-07|10.6|66/142|b.7.1.1| RP:SCP:REP 79->363|2b2nA1|3e-55|19.8|247/308|c.37.1.19| RP:SCP:REP 443->614|1c4oA2|4e-23|63.4|172/174|c.37.1.19| RP:SCP:REP 673->714|1qojA|1e-07|26.2|42/46|a.2.9.1| HM:SCP:REP 30->442|1d9xA1|1.8e-132|44.8|411/413|c.37.1.19|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 441->625|2eyqA5|2.4e-35|31.8|176/0|c.37.1.19|2/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 661->716|1e52A_|2.1e-09|41.1|56/56|a.2.9.1|1/1|C-terminal UvrC-binding domain of UvrB| OP:NHOMO 967 OP:NHOMOORG 925 OP:PATTERN ------------------------11111111111---1111111111-1111-------------11 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111--1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111221111111111111211111111111111111111211111111111111111111111111111111111111111111111111132111222112221111111111111111122112112121111121121112221111111111112111111111111111111111111111-1111111111111111111111111111111211111111111111111111111111---------11111111111111111111111111111111111111111211111-111111111111111111111111211111111111111111111111311111111111111111111111111111111111111111111111111111111111111111111211111211111121111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--1111111111111111111111111-111111111111111111111111111111111111111111111111-111111111111111111111111-1111111111111111111111-1-11111111111111111111111111211111 ------------------------------------------------------------------------------------------------------------2--------------------------------------------------1---1---------111--17111--1------1-----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 686 STR:RPRED 95.1 SQ:SECSTR #############################cccccccccccccTTHHHHHHHHHHHHHTTccEEEEEEcTTccHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHcTTcEEEEEccGGGccccccEETTTTEEccccccccTHHHHHHHHHHHHTTTcccEEEEEcGGGGccccccHHHHTTcEEEEccccccTTTHHHHHHTTTcccccccccccTTccccTTccccEEcccTTcccccEEEccccEEEEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccTTGGGGHHHHTTccTTcccccHHHHccTTcEEEEETHHHHHHHHHHHHHHHHHHHHTTTTTTcccGGGGGcccccHHHHHHHcccEEEEcccccHHHHHHcccEcEEEcccTTcccccEEEEEccTTHHHHHHHHHHHHHHTTcEEEEEcccTTHHHHHHHHHHTTTccccccccccccTTTHHHHHHHTTTcccEEEEccTTcTTcccTTEEEEEEccTTcccGGGcHHHHHHHHGGGTTcTTcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHTTcccccccccccccHHHHHHHHHHcHHHHHHHHHHHTTcccTTGGGcccHHHHHHHHHHHTHHHHcccccccTTcHHHHHHHHHHHHHHHHHHHEEcTTccEEHHH###### DISOP:02AL 5-7, 17-32, 41-42, 613-679, 720-721| PSIPRED ccEEccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccccEEEccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEHHHccccccHHHHHccEEEEEEcccccHHHHHHHHHHHccEEccccccccEEEEEccEEEEEcccccccEEEEEEccEEEEEEEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHcccEEEEEEcHHHHcccccccccEEEEEcccHHHccccHHHHHHHHHccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccc //