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Nocardia farcinica IFM 10152 (nfar0)
Gene : vsr
DDBJ      :vsr          putative DNA mismatch endonuclease
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  159/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.52.1
:156 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->116 1cw0A PDBj 2e-11 35.8 %
:RPS:PDB   4->118 1cw0A PDBj 1e-09 29.5 %
:RPS:SCOP  5->118 1cw0A  c.52.1.15 * 5e-18 35.1 %
:HMM:SCOP  2->153 1cw0A_ c.52.1.15 * 1.9e-39 40.3 %
:RPS:PFM   2->70 PF03852 * Vsr 4e-12 50.0 %
:HMM:PFM   9->74 PF03852 * Vsr 1.4e-21 46.0 63/75  
:HMM:PFM   93->118 PF04480 * DUF559 0.00058 26.9 26/109  
:BLT:SWISS 9->119 VSN1_NOCAE 6e-28 50.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55075.1 GT:GENE vsr GT:PRODUCT putative DNA mismatch endonuclease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(243762..244232) GB:FROM 243762 GB:TO 244232 GB:DIRECTION - GB:GENE vsr GB:PRODUCT putative DNA mismatch endonuclease GB:PROTEIN_ID BAD55075.1 LENGTH 156 SQ:AASEQ MIATDPATSARMSRQRRTGTAPELALRRELHRRGLRYFVDRAPLRGQRRRADVVFPRRKLAVYVDGCFWHRCPQHATDPKNNGRWWADKLAGNVARDRATDEALRAAGWQVVRVWEHEDPIAAADRVQAALSAEPAPGPTSAGRARPHDSTPPSPR GT:EXON 1|1-156:0| BL:SWS:NREP 1 BL:SWS:REP 9->119|VSN1_NOCAE|6e-28|50.9|110/166| BL:PDB:NREP 1 BL:PDB:REP 5->116|1cw0A|2e-11|35.8|109/155| RP:PDB:NREP 1 RP:PDB:REP 4->118|1cw0A|1e-09|29.5|112/155| RP:PFM:NREP 1 RP:PFM:REP 2->70|PF03852|4e-12|50.0|66/74|Vsr| HM:PFM:NREP 2 HM:PFM:REP 9->74|PF03852|1.4e-21|46.0|63/75|Vsr| HM:PFM:REP 93->118|PF04480|0.00058|26.9|26/109|DUF559| GO:PFM:NREP 2 GO:PFM GO:0004519|"GO:endonuclease activity"|PF03852|IPR004603| GO:PFM GO:0006298|"GO:mismatch repair"|PF03852|IPR004603| RP:SCP:NREP 1 RP:SCP:REP 5->118|1cw0A|5e-18|35.1|111/155|c.52.1.15| HM:SCP:REP 2->153|1cw0A_|1.9e-39|40.3|149/155|c.52.1.15|1/1|Restriction endonuclease-like| OP:NHOMO 179 OP:NHOMOORG 162 OP:PATTERN ---------------------------------------------1---1------------------ -21-2---------------------------11111112----1----1--111------11-1-1--1-1222111--11------1----1-----------1---1-------------------111----1--11----------------------------------11--1--1---------------------------------------1---------11-------------------------1-----------------------------------------------------1----------------------------------1-----1---1-----------------1112-----11--11--1--21--------------1-231--------11---1--1----1-111-11-----------111-------------------------------------1-----------1-1----1111--------1------1-1---1----1-11--1----122-12-1---11--1----1-1---1---1-1------1--1--2------------------------1------1--1---1-----------------------1------------1111111111-1-111111-11111--11--1111-------------------------111------------------1-----111-1-2----1--------------------------1-------2-1-----------------------------------1----------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 115 STR:RPRED 73.7 SQ:SECSTR ###cHHHHHHHHHTccccccHHHHHHHHHHHHTTcccEEcEEccTTcTTcccEEEGGGTEEEEEEcTTTTTcccTTccccccHHHHHHHHHHHHHHHHHHHHHHHHTTcEEEEEEHHH###################################### DISOP:02AL 1-21, 142-156| PSIPRED cccccHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEccccccccccccEEEcccEEEEEEcccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHHccccccccccccccccccccccc //