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Nocardia farcinica IFM 10152 (nfar0)
Gene : xerD
DDBJ      :xerD         putative recombinase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  824/915 : Eukaryota  2/199 : Viruses  2/175   --->[See Alignment]
a.60.9d.163.1
:316 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->43,149->307 1a0pA PDBj 1e-32 47.1 %
:RPS:PDB   6->306 3c28B PDBj 2e-41 14.7 %
:RPS:SCOP  6->307 1p7dA  d.163.1.1 * 6e-30 19.8 %
:HMM:SCOP  1->104 1a0pA1 a.60.9.1 * 1.8e-16 41.8 %
:HMM:SCOP  110->313 4crxA2 d.163.1.1 * 2.9e-55 45.7 %
:RPS:PFM   6->89 PF02899 * Phage_integr_N 2e-10 46.8 %
:RPS:PFM   148->300 PF00589 * Phage_integrase 9e-26 53.4 %
:HMM:PFM   141->300 PF00589 * Phage_integrase 9e-45 41.7 151/173  
:HMM:PFM   6->94 PF02899 * Phage_integr_N 6.3e-24 47.6 84/84  
:BLT:SWISS 2->316 XERD_MYCTU 8e-96 63.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56853.1 GT:GENE xerD GT:PRODUCT putative recombinase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2183995..2184945 GB:FROM 2183995 GB:TO 2184945 GB:DIRECTION + GB:GENE xerD GB:PRODUCT putative recombinase GB:PROTEIN_ID BAD56853.1 LENGTH 316 SQ:AASEQ MLAREIDAYLDHLAVERGAARNTLGAYRRDLGRYRDFLTERGIGGLEQVREADVAAFTVALRSGGGDHPPLAASSVARALIAVRGLHRFAAAEGMTSTDVAHAVKPPTPGRRLPKALPYDQVLRLLEAAGGGPAEDGDTAAADGGPRGLRDRALLELLYSTGARISEMVGLDVDDLDTTERAVVLRGKGGKQRIVPIGRPALAAVDAYLVRGRPVLAAAGKGTGGALFLNVRGGRLSRQSAWQVLQTAAERAGIGAAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVSTLREVWATAHPRAR GT:EXON 1|1-316:0| BL:SWS:NREP 1 BL:SWS:REP 2->316|XERD_MYCTU|8e-96|63.1|306/311| SEG 127->146|eaagggpaedgdtaaadggp| SEG 217->226|aaagkgtgga| BL:PDB:NREP 1 BL:PDB:REP 2->43,149->307|1a0pA|1e-32|47.1|196/271| RP:PDB:NREP 1 RP:PDB:REP 6->306|3c28B|2e-41|14.7|292/315| RP:PFM:NREP 2 RP:PFM:REP 6->89|PF02899|2e-10|46.8|79/84|Phage_integr_N| RP:PFM:REP 148->300|PF00589|9e-26|53.4|146/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 141->300|PF00589|9e-45|41.7|151/173|Phage_integrase| HM:PFM:REP 6->94|PF02899|6.3e-24|47.6|84/84|Phage_integr_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 1 RP:SCP:REP 6->307|1p7dA|6e-30|19.8|268/280|d.163.1.1| HM:SCP:REP 1->104|1a0pA1|1.8e-16|41.8|98/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 110->313|4crxA2|2.9e-55|45.7|188/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 2431 OP:NHOMOORG 858 OP:PATTERN --111111--------2---------------111-1--322211111------1111111111---- 22H2423222222223522-242232222222E437445B2355122222224252422243522431--322223A732221--111344322222--52839332222222222222222222232333222322221123752845-12111-1------41-21251-------------311222233223233223245533432332224286782542222323324724222224442223622232322322332233222322221121111-1-1112112322222211111111111111111112111384324322323442224423222331321746437824144222243-232A922222222223223222323222222222222-322233332F33222422HD2244222227222222322333333337222232222222222222222112222222222222-223422222734534343333447F23222244322G6222445335323833222833322-2222222433E332253-2242342323223543443232223231211111111111111111131212CA242482123343269342423342824234--24323------43442434557465755-522785446355533333274682DH43223262342243335742233322-322222222322--12---------222222222222222122223233422222232232333323333255722222222223347333433334422233333332222--32442222--------322---------1--------1------11-11121112A2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------1---------- ----------------------------------------------------------------------------------------------1----------------------------------------------1--------------------------------- STR:NPRED 316 STR:RPRED 100.0 SQ:SECSTR cHHHHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHHTTccccccccHHHHHHHHHHHHHTTcccHcccHHHHHHHHHHHHHHHHHHTcccGGGcHHHHHHHHHHHHHHHHTTccccccccccHHHHHHHHHHHTTcccHccHHHHHHHHHHHHHHHHcccHHHHHHccGGGEEEcTTccEEEccccccEEEEccHHHHHHHHHHHHHHTGGGcTTcccccccccccHHHHHHHHHHHHHHHHccccccccTccccTTHHHHHHHHHHHHTTccHHHHHHHTTccccHHHHHHHcccHHHHccHHcGGGTTTc DISOP:02AL 314-316| PSIPRED ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHEEccccEEEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccccc //