[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56572.1
DDBJ      :             Peptidase S41A
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  713/915 : Eukaryota  23/199 : Viruses  0/175   --->[See Alignment]
c.14.1
:439 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   53->368 1fcfA PDBj 1e-39 31.8 %
:RPS:PDB   74->182 2dm8A PDBj 3e-17 17.6 %
:RPS:PDB   239->394 3dorB PDBj 2e-33 21.1 %
:RPS:SCOP  106->369 1j7xA  c.14.1.2 * 3e-64 17.6 %
:HMM:SCOP  21->372 1fc6A4 c.14.1.2 * 9.3e-88 49.8 %
:RPS:PFM   103->171 PF00595 * PDZ 6e-06 42.6 %
:RPS:PFM   203->365 PF03572 * Peptidase_S41 2e-34 50.0 %
:HMM:PFM   202->366 PF03572 * Peptidase_S41 8.1e-61 53.1 160/167  
:HMM:PFM   101->170 PF00595 * PDZ 5.1e-13 30.4 69/81  
:BLT:SWISS 26->368 CTPA_BARBK 6e-89 51.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56572.1 GT:GENE ABA56572.1 GT:PRODUCT Peptidase S41A GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(28738..30057) GB:FROM 28738 GB:TO 30057 GB:DIRECTION - GB:PRODUCT Peptidase S41A GB:PROTEIN_ID ABA56572.1 GB:DB_XREF GI:76881891 InterPro:IPR001478 InterPro:IPR004447 InterPro:IPR005151 LENGTH 439 SQ:AASEQ MPFSKRDLLIITLGLVLGVSLVFGPMVLAERSENRPEALPLEELRAFSEVFGQIKRSYVEIVDDKTLIEDSIRGMLTGLDPHSAYLDPEAYKELRIGTSGEFGGLGIEVGMEDGFVRVVAPIDDTPAQKAGINAGDLIVRIDDTPVKGMSLSDAVQRMRGKPGTDILLTIIREGEEQPLKFTITRAIIKVKSVKNRTLEEGYGYLRISQFQTETASNLQKAIEKLKKENGGKLKGLVLDLRNNPGGVLSAAIEVSDAFLEKGIIVYTEGRDLESKQKFRATSGDALKGSPIVILVNGGSASASEIVSGALQDHHRAIVVGSRTFGKGSVQTILPLTENTALKLTTARYYTPSGRSIQAEGIIPDIELESVKVSASALSDINPVREANLSRHLSNGRKAEEKKESTEKVKKTSLATEDYPLYEALNLLKGLSIAASQQYR GT:EXON 1|1-439:0| BL:SWS:NREP 1 BL:SWS:REP 26->368|CTPA_BARBK|6e-89|51.2|342/434| TM:NTM 1 TM:REGION 8->30| SEG 8->22|lliitlglvlgvslv| SEG 223->236|eklkkenggklkgl| SEG 397->412|kaeekkestekvkkts| BL:PDB:NREP 1 BL:PDB:REP 53->368|1fcfA|1e-39|31.8|311/387| RP:PDB:NREP 2 RP:PDB:REP 74->182|2dm8A|3e-17|17.6|108/116| RP:PDB:REP 239->394|3dorB|2e-33|21.1|152/527| RP:PFM:NREP 2 RP:PFM:REP 103->171|PF00595|6e-06|42.6|68/82|PDZ| RP:PFM:REP 203->365|PF03572|2e-34|50.0|160/169|Peptidase_S41| HM:PFM:NREP 2 HM:PFM:REP 202->366|PF03572|8.1e-61|53.1|160/167|Peptidase_S41| HM:PFM:REP 101->170|PF00595|5.1e-13|30.4|69/81|PDZ| GO:PFM:NREP 3 GO:PFM GO:0005515|"GO:protein binding"|PF00595|IPR001478| GO:PFM GO:0006508|"GO:proteolysis"|PF03572|IPR005151| GO:PFM GO:0008236|"GO:serine-type peptidase activity"|PF03572|IPR005151| RP:SCP:NREP 1 RP:SCP:REP 106->369|1j7xA|3e-64|17.6|262/302|c.14.1.2| HM:SCP:REP 21->372|1fc6A4|9.3e-88|49.8|273/0|c.14.1.2|1/1|ClpP/crotonase| OP:NHOMO 1123 OP:NHOMOORG 736 OP:PATTERN -------------------------------------------------------------------- 225-------------------------------------1--------------------------111---------111111111333333341--12433333323111111111111112333443234334442211121634533322332222223334334322222222222222111111-12111111111111111112222111121211111111122111111111111111111111---11--1-111--11--1--------------------------------------------------22111111111111121221111122112112122222312111122211313111111111112221112111111111111112-11111112111-2111121222111111111111111112222222222222122------------1111111111111----1111111111111111111111111111111122111111111111111111111112111111111111111112232312121111111133212232122222621111111111111111111111111111111122111212222221222222222222--21221------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--22111111111122221111-111111111122222222222222222222222222222---------11111111111111122222222223444111144222211111111-1--------------------------1111111111131 ------------------------------------------------------------------------------------------------------------6------------------------------------------------------1---------1-4551E222355214-44351---3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 342 STR:RPRED 77.9 SQ:SECSTR ####################################################HHHHHHHcccccHHHHHccccccccccccccccccTTccEEEEEEcccccccccccccTTcccEEccccccccHHHHHTccTEEccccTTccccccccccEEEEEEEcTTGGGcTTTHHHHHHccGGGTcccHHHHHHHHHHHHHHHHTTccEEEEEEEcccHHHHHHHHHHHHcTTHHHHccccccHHHHHHHHHHHHHHHHHHHHHHTcccccccccGGGccEEccccccccccccEEEEEcTTccTHHHHHHHHHHHTTccEEEEcccccccccEEEEcccccccEEEEcEEEEcTTccccTTTcccccEEccccHHHHHHTTccHHHHHHHHHHHHHT############################################# DISOP:02AL 1-4, 30-37, 393-412, 435-439| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccEEEEEEEEEEEEcccEEEEEEEccccHHHHHccccccEEEEEccEEcccccHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEEEEEcccEEEcccccccccEEEEEccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccccEEEEEccccccccccEEEEEccccccHHHHHHHHHHHcccEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEcccccEEcccccccEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcHHHccccccc //