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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56613.1
DDBJ      :             DNA helicase II
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  145/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.69.7c.37.1
:632 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   374->545 2is6B PDBj 1e-12 36.9 %
:BLT:PDB   557->618 1uaaB PDBj 5e-09 48.4 %
:RPS:PDB   358->621 3e1sA PDBj 2e-11 15.9 %
:RPS:SCOP  272->389 1gm5A3  c.37.1.19 * 8e-06 26.2 %
:RPS:SCOP  372->621 1ve6A1  b.69.7.2 * 3e-14 10.3 %
:HMM:SCOP  247->620 1qhh.1 c.37.1.19 * 3.5e-58 28.1 %
:RPS:PFM   374->543 PF00580 * UvrD-helicase 3e-06 26.6 %
:HMM:PFM   261->347 PF00580 * UvrD-helicase 6.3e-06 31.4 86/533  
:HMM:PFM   374->549 PF00580 * UvrD-helicase 1.2e-13 21.1 175/533  
:HMM:PFM   31->130 PF08378 * NERD 2.2e-11 23.4 94/125  
:HMM:PFM   569->614 PF01443 * Viral_helicase1 0.00019 27.9 43/226  
:BLT:SWISS 269->335 UVRB_TREDE 2e-05 36.5 %
:BLT:SWISS 374->545 UVRD_ECOLI 4e-12 36.9 %
:BLT:SWISS 559->631 REP_BUCAI 8e-09 46.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56613.1 GT:GENE ABA56613.1 GT:PRODUCT DNA helicase II GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(75986..77884) GB:FROM 75986 GB:TO 77884 GB:DIRECTION - GB:PRODUCT DNA helicase II GB:PROTEIN_ID ABA56613.1 GB:DB_XREF GI:76881932 LENGTH 632 SQ:AASEQ MNFNIGWIARYRNFDTMATFIPALTTIPRMTRGERRFGRRLDSLLEEDYLVWYDIPLGRRRRYPDFIILHPARGLLFLEVKDWKIETIRSITPDSVVIDTQEGRKTVSNPLAQARQCAFAAIDQLKRDPQLTQSDKCYRGKLCFPYGHGVVFPNITRRQWNQAIPEAEQEILLPAHRVICKDEMLTTADPEAFQQRLWNMFDYRFGEQFSVPQLDRIRWQLFPEVRIDAPTTDLFGNDEAAEDEPASNLVPNIVRVMDLHQEQLARSMGDGHRVIHGVAGSGKTLILGYRCLHLAQAISKPILVLCFNITLAARLRCFIAEKGISEKVKVHHFHEWCSLQLKTYQADLAPGKGPIWERQVESVIRAVDQSRIPRAQYGAVMIDEGHDFEQAWLKLVVQMVDPDTNSLLLLYDDAQSIYQKSSLKFPLSSAGVQARGRTTILKLNYRNTREILTFAYDFAQDFLKAHDADDDHIPLIAPEVAGVSGPRPAFRRLSSPRDEARYLVRCIQTWRSQGSGLNSIAVVYTGNSQGRLFYDALREASIPSRCLQQSADKRSYDPQADEVVLLSRQSSKGLEFDTVLLCGLGALSNDEERLAQEARLLYVGMTRARRRLLVTSCKPNWYTQRLTELASA GT:EXON 1|1-632:0| BL:SWS:NREP 3 BL:SWS:REP 269->335|UVRB_TREDE|2e-05|36.5|63/662| BL:SWS:REP 374->545|UVRD_ECOLI|4e-12|36.9|149/720| BL:SWS:REP 559->631|REP_BUCAI|8e-09|46.6|73/645| SEG 29->40|rmtrgerrfgrr| BL:PDB:NREP 2 BL:PDB:REP 374->545|2is6B|1e-12|36.9|149/652| BL:PDB:REP 557->618|1uaaB|5e-09|48.4|62/633| RP:PDB:NREP 1 RP:PDB:REP 358->621|3e1sA|2e-11|15.9|252/517| RP:PFM:NREP 1 RP:PFM:REP 374->543|PF00580|3e-06|26.6|158/449|UvrD-helicase| HM:PFM:NREP 4 HM:PFM:REP 261->347|PF00580|6.3e-06|31.4|86/533|UvrD-helicase| HM:PFM:REP 374->549|PF00580|1.2e-13|21.1|175/533|UvrD-helicase| HM:PFM:REP 31->130|PF08378|2.2e-11|23.4|94/125|NERD| HM:PFM:REP 569->614|PF01443|0.00019|27.9|43/226|Viral_helicase1| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF00580|IPR000212| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF00580|IPR000212| GO:PFM GO:0005524|"GO:ATP binding"|PF00580|IPR000212| GO:PFM GO:0006281|"GO:DNA repair"|PF00580|IPR000212| RP:SCP:NREP 2 RP:SCP:REP 272->389|1gm5A3|8e-06|26.2|107/259|c.37.1.19| RP:SCP:REP 372->621|1ve6A1|3e-14|10.3|234/313|b.69.7.2| HM:SCP:REP 247->620|1qhh.1|3.5e-58|28.1|363/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 171 OP:NHOMOORG 146 OP:PATTERN ----------------------------------1--------------------------------- -------111---------------1------11-1----131-----------------1--1-1----3-----------------------------------------------------------------1--12---11---1------------------1------------------------------1----1---1------------------------------------------------------------------------------------------------------------------1-----------1-1--111-1------2------2----2---------------------------------1-------------------------------1---------------1---------------------------------------------------1--------------------1-------1----1-----11-1--11-1-1-------------------1-11-----1-----------1---------1--1-----------------------------1-1-1-1---------1-------------11--1------1---1111321111111-32113211123111111111111111-1121212121111111-1111111--1--------1---------------111--1------------------------12--11---1-----1--------------1-------11111----------------1-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 269 STR:RPRED 42.6 SQ:SECSTR #####################################################################################################################################################################################################################################################################################################################################################################HHTTEETTEEcccccccccccEEEEccGGGccHHHHHHHHTTccTTcEHEEEEEcTTcccccccccHHHHHHHHccEEEcccccHHHccHTcHHHHHHHHHHTTcccccccTTEEEEEcccTTccTTcHHHHHHHHHHTTcGGGcEEEEcccccTTcHHHHHHHHHHHccccccEEccccEEcTTcEEETEEEEEcGGGGTTEEEccEEEHHHHTTccEEEEEEEEcEEEccGGGGGGccHHHHHHHHHTEEEEEEEEEcHHHHGGTTc###### DISOP:02AL 241-250, 630-632| PSIPRED ccccEEEEEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEccccEEEEEEEccccccEEcccccEEEEEccccEEEEccHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEEEEEHHHHHHHHHHccccHHHHHHcccccEEEcccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHcHHHHHHcccHHHHccHHccccccccccHHHHHHHHcHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccEEEEEcHHcccHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHccEEEEEEEccccHHHHHHHcccc //