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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56648.1
DDBJ      :             ABC transporter, transmembrane region
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  908/915 : Eukaryota  197/199 : Viruses  1/175   --->[See Alignment]
c.37.1f.37.1
:625 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   36->613 2hydA PDBj 2e-89 34.6 %
:RPS:PDB   34->615 3b60A PDBj 8e-80 29.2 %
:RPS:SCOP  36->357 2hydA2  f.37.1.1 * 3e-57 21.4 %
:RPS:SCOP  360->610 1q3hA  c.37.1.12 * 4e-45 24.2 %
:HMM:SCOP  38->354 1pf4A2 f.37.1.1 * 8.3e-72 29.2 %
:HMM:SCOP  357->598 1pf4A1 c.37.1.12 * 8e-70 37.2 %
:RPS:PFM   98->329 PF00664 * ABC_membrane 6e-23 30.2 %
:RPS:PFM   369->435 PF03193 * DUF258 3e-04 35.4 %
:RPS:PFM   418->543 PF00005 * ABC_tran 4e-15 42.1 %
:RPS:PFM   515->582 PF02463 * SMC_N 2e-05 33.8 %
:HMM:PFM   51->332 PF00664 * ABC_membrane 1.4e-40 21.2 273/275  
:HMM:PFM   418->543 PF00005 * ABC_tran 5.3e-25 36.8 114/118  
:HMM:PFM   387->431 PF03193 * DUF258 3.5e-05 34.1 44/161  
:BLT:SWISS 36->615 YWJA_BACSU 1e-97 35.1 %
:PROS 515->529|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56648.1 GT:GENE ABA56648.1 GT:PRODUCT ABC transporter, transmembrane region GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(121067..122944) GB:FROM 121067 GB:TO 122944 GB:DIRECTION - GB:PRODUCT ABC transporter, transmembrane region GB:PROTEIN_ID ABA56648.1 GB:DB_XREF GI:76881967 InterPro:IPR001140 InterPro:IPR001687 InterPro:IPR003439 InterPro:IPR003593 LENGTH 625 SQ:AASEQ MSSGNFHGPYLRLQDFVAYSDRYILLTSTTHSVQALARLLRYAKGYRRRILAATACSIINKLFDIAPEILIGVAIDVVVNKEDSFVARLNFTTPEEQILVLAILTFFIWVGESLFEYLYKILWRNLAQRLQADLRQDTYEHVQQLDMSFFESKSSGHLVAIMNDDVNQLERFLDGGANALIQVGVAVIAVGAVFFILSPLIALLAFTPVPLIIWGAFFFQRKAGPLYNDVREKVGDLASRLGNNLSGIATIKSFTAEAREAERLKAVSETYVEANRRAIRVSSAFIPVIRMAILVGFLATFTIGGMMALQGSLNVGAYGVLVFLTQRLLWPLTGLAEVIDLFERAMASTRRILDLLEVTVEVQDVSNRSLATPVRGEVHFQGVSFRYASSGAGVENINLSVPGGSTLALVGATGSGKSTLIKLLLRFYDPHEGQVCIDGQPVREISLYSLRQAIGLVSQEVYLFEGSIRNNIAYGRPDADEESIIKAAITAEAWNFIHALPQGLDTPVGERGVRLSGGQRQRLSLARALIKNPPILVLDEATSAVDNETEAAIQRSLQRIGHDRTVIMIAHRLSTIVYADRIVVIHQGRVIEHGTHAELLEANGRYAAQWRVQTGLAKAEDTLLG GT:EXON 1|1-625:0| BL:SWS:NREP 1 BL:SWS:REP 36->615|YWJA_BACSU|1e-97|35.1|564/575| PROS 515->529|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 6 TM:REGION 59->81| TM:REGION 97->119| TM:REGION 173->195| TM:REGION 199->220| TM:REGION 283->305| TM:REGION 316->338| SEG 183->196|vgvaviavgavffi| BL:PDB:NREP 1 BL:PDB:REP 36->613|2hydA|2e-89|34.6|567/578| RP:PDB:NREP 1 RP:PDB:REP 34->615|3b60A|8e-80|29.2|569/572| RP:PFM:NREP 4 RP:PFM:REP 98->329|PF00664|6e-23|30.2|232/274|ABC_membrane| RP:PFM:REP 369->435|PF03193|3e-04|35.4|65/160|DUF258| RP:PFM:REP 418->543|PF00005|4e-15|42.1|121/123|ABC_tran| RP:PFM:REP 515->582|PF02463|2e-05|33.8|68/536|SMC_N| HM:PFM:NREP 3 HM:PFM:REP 51->332|PF00664|1.4e-40|21.2|273/275|ABC_membrane| HM:PFM:REP 418->543|PF00005|5.3e-25|36.8|114/118|ABC_tran| HM:PFM:REP 387->431|PF03193|3.5e-05|34.1|44/161|DUF258| GO:PFM:NREP 11 GO:PFM GO:0005524|"GO:ATP binding"|PF00664|IPR001140| GO:PFM GO:0006810|"GO:transport"|PF00664|IPR001140| GO:PFM GO:0016021|"GO:integral to membrane"|PF00664|IPR001140| GO:PFM GO:0042626|"GO:ATPase activity, coupled to transmembrane movement of substances"|PF00664|IPR001140| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00664|IPR001140| GO:PFM GO:0003924|"GO:GTPase activity"|PF03193|IPR004881| GO:PFM GO:0005525|"GO:GTP binding"|PF03193|IPR004881| GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| GO:PFM GO:0005524|"GO:ATP binding"|PF02463|IPR003395| GO:PFM GO:0005694|"GO:chromosome"|PF02463|IPR003395| RP:SCP:NREP 2 RP:SCP:REP 36->357|2hydA2|3e-57|21.4|318/323|f.37.1.1| RP:SCP:REP 360->610|1q3hA|4e-45|24.2|236/265|c.37.1.12| HM:SCP:REP 38->354|1pf4A2|8.3e-72|29.2|305/311|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 357->598|1pf4A1|8e-70|37.2|242/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 46567 OP:NHOMOORG 1174 OP:PATTERN MMD5HGEHNNMJNKPIZBFGCEFLlMPbfRbPF6DBB8FEFC8RUNQcJO*mZ8PUHMRGLHH8L166 NXjG*XYckknUWQXRULK-Kg99W*KKKKKOrghhv***K*W*q*vfsfbN*xuMRgBBmssg*g****ZYXWWsbZdL*cdB8AAARROM5KDFK--CDOFIFYGZIP567777689A6666DROIQZLLRTZObihy*DCFyRrggscciZYSSRHOLPJdfYg***bLRILJJGPILFHgSWIGhaAWbx********x********xx*****Yiq**jovxywvv**XWXYZYWUXXWWWXWUTRPVwnXb**bMhalsqLM**cUOaefbfjjlprsotu*zourpslqunsrYZYXYZbacZZXY*qpkigrrtii*t*********b*fm***Yggd*jhpm*kmQH**kcVVebRWfbggOSSVFYTSSMHHEEJaQ***WQj****v**z****yx**-mo*ld*n***OA**************GJNx*********QPQQQQQQnUYIPfX*556556667668789A8A977A98886A6DDCKBF***t*******vrqso*****v*yc*****x*r8Iqsltehdg*n****ZjbMUGOgQGIGEGDFQOLQdWXm*RcOdZOYpTRaEVVRSQTbSZOQQPnsYuJJIMDGEEGHC998A99899EICEHPNmktQlNSEPIpPVYZTOUZRQQTQWZaUVW4-GGQPL322222*u**U*rv***w*z*uu-*vuvzuzvyy**yqrurqs*****ioeptlqoqqqqqooqoqm*mimpppsR4************34FDBEBBCLMNMMF*c*XVWaZaIPPONSOSbLNPONFUFKUoastmtt***r**xqX***ADDCDFECDKfih*ijjjiqqwtuPRTMONOMMOCDDD54LSLLEEBD54464575*AYDBABH-D9E9IDCOOJACKC9AAA9UakMKhshld9VN 7876kfO-xSECYfaNSULPTXVkYmPOOEGHHVWRIRPPPNMIGHZQTjdhnnUTcPQNMOKHG88A2HC7HDHCF2DFBFFDJL89-arFSVWVIIKNHCLWUK8P*s*orf*t*TPSMPgQw*Q*L**x2*d*RPSMpSW*jIYOQHfMH*RhacxTz*W*ZfX*fp*yq*jHNLG*DECLP*tp*L**ON****h ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 1-4, 23-31, 359-374, 613-623| PSIPRED ccccccccccccHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEcccccHHHccccEEEccccEEEEEccccccHHHHHHHHHHcccccccEEEEccEEcccccHHHHHHHccccccccEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcccccccc //