[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56754.1
DDBJ      :             alanine racemase
Swiss-Prot:ALR_NITOC    RecName: Full=Alanine racemase;         EC=5.1.1.1;

Homologs  Archaea  5/68 : Bacteria  829/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
b.49.2c.1.6
:356 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->351 3b8uA PDBj 2e-77 45.3 %
:RPS:PDB   4->353 3b8uB PDBj 5e-61 45.0 %
:RPS:SCOP  8->233 1rcqA2  c.1.6.1 * 4e-32 39.3 %
:RPS:SCOP  227->353 1rcqA1  b.49.2.2 * 1e-43 46.8 %
:HMM:SCOP  8->233 1rcqA2 c.1.6.1 * 1e-65 48.7 %
:HMM:SCOP  214->355 1bd0A1 b.49.2.2 * 1.1e-47 45.8 %
:RPS:PFM   8->216 PF01168 * Ala_racemase_N 7e-13 32.7 %
:RPS:PFM   232->353 PF00842 * Ala_racemase_C 2e-27 49.2 %
:HMM:PFM   8->218 PF01168 * Ala_racemase_N 4.4e-61 42.3 201/214  
:HMM:PFM   232->355 PF00842 * Ala_racemase_C 3.1e-43 41.9 124/129  
:BLT:SWISS 1->356 ALR_NITOC 0.0 100.0 %
:PROS 31->41|PS00395|ALANINE_RACEMASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56754.1 GT:GENE ABA56754.1 GT:PRODUCT alanine racemase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 246882..247952 GB:FROM 246882 GB:TO 247952 GB:DIRECTION + GB:PRODUCT alanine racemase GB:PROTEIN_ID ABA56754.1 GB:DB_XREF GI:76882073 InterPro:IPR000821 InterPro:IPR001608 InterPro:IPR006162 InterPro:IPR011079 LENGTH 356 SQ:AASEQ MNFPQAIIDASALRHNLQRVRELAPRSQIMAVVKADGYGHGLTRVADVLVAADAFAVARLEEATALRQAGHRCPVVLLGGISDKEQLQLAAAHRLTLVVHEFAQLDLLERVRITSPLPVWVKADTGMHRLGFPPQVVAKAIARLRCCPAVASVVGLMSHLASADESEDFLTPIQLQTFEGIAAPGLLRSMANSAAVMVYPYAHFDWVRPGLMLYGASPFAHGTGAAVGLKSVMTLQTRLIAIHHLRPGDSIGYGATWVCPEAMTVGVAALGYGDGYPRHAVSGTPVLVNGRPVPLVGRVSMDMITLDLRTQPKAKVGDPVIAWGPNLPVEEVARHATTIPYELLCQVTGRVPRTME GT:EXON 1|1-356:0| SW:ID ALR_NITOC SW:DE RecName: Full=Alanine racemase; EC=5.1.1.1; SW:GN Name=alr; OrderedLocusNames=Noc_0224; SW:KW Cell shape; Cell wall biogenesis/degradation; Complete proteome;Isomerase; Peptidoglycan synthesis; Pyridoxal phosphate. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->356|ALR_NITOC|0.0|100.0|356/356| GO:SWS:NREP 4 GO:SWS GO:0008360|"GO:regulation of cell shape"|Cell shape| GO:SWS GO:0007047|"GO:cellular cell wall organization"|Cell wall biogenesis/degradation| GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0009252|"GO:peptidoglycan biosynthetic process"|Peptidoglycan synthesis| PROS 31->41|PS00395|ALANINE_RACEMASE|PDOC00332| SEG 44->63|rvadvlvaadafavarleea| BL:PDB:NREP 1 BL:PDB:REP 1->351|3b8uA|2e-77|45.3|349/358| RP:PDB:NREP 1 RP:PDB:REP 4->353|3b8uB|5e-61|45.0|349/357| RP:PFM:NREP 2 RP:PFM:REP 8->216|PF01168|7e-13|32.7|202/211|Ala_racemase_N| RP:PFM:REP 232->353|PF00842|2e-27|49.2|122/127|Ala_racemase_C| HM:PFM:NREP 2 HM:PFM:REP 8->218|PF01168|4.4e-61|42.3|201/214|Ala_racemase_N| HM:PFM:REP 232->355|PF00842|3.1e-43|41.9|124/129|Ala_racemase_C| GO:PFM:NREP 2 GO:PFM GO:0006522|"GO:alanine metabolic process"|PF00842|IPR011079| GO:PFM GO:0008784|"GO:alanine racemase activity"|PF00842|IPR011079| RP:SCP:NREP 2 RP:SCP:REP 8->233|1rcqA2|4e-32|39.3|224/226|c.1.6.1| RP:SCP:REP 227->353|1rcqA1|1e-43|46.8|126/131|b.49.2.2| HM:SCP:REP 8->233|1rcqA2|1e-65|48.7|224/0|c.1.6.1|1/1|PLP-binding barrel| HM:SCP:REP 214->355|1bd0A1|1.1e-47|45.8|131/149|b.49.2.2|1/1|Alanine racemase C-terminal domain-like| OP:NHOMO 1069 OP:NHOMOORG 840 OP:PATTERN --------------------------------------11111------------------------- 1111111111111111111-11111111111111111111111111111221212112--112111111111111111111111111111111111---11111111111--------------11111111111111111---111111111111111111111111111111111111111111111111122222222222222221122222231111222111111321111111111111111111111111111111111111111232111111111111111111111111111111111111111111111111112233322331211211111111111111212211121112112111211-1111111112-1111111112111111111111-1111111223112223222222112112111111111111111111112221111------------1111111111111-----1121112221222223211112211222212232121111111111111111111111111211111111111111111111111121111111111111111111111111111111-1111111111111111332111111121111111211111111111--11111------22111212222222222-22222222222222222232221122322332232222323322111222211222122212222--1111111111111111111111111111111222321211111222211112222111111111111111122322222131221111111111111111111111111111111111--------------------------11111-----112 -------------------------------------------------------------------------------------------------------------1-----------------------------------------------------31---------------------------111---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 356 STR:RPRED 100.0 SQ:SECSTR ccccEEEEEHHHHHHHHHHHHHHcTTcEEEEEcHHHHHHTcTTTTTTTcTTccEEEEccHHHHHHHHHTTccccEEETTccccGGGHHHHHHHTEEEEEccHHHHHHHHHcccccccccEEEcccccccccccGGGHHHHHHHHTTccccccccEEEcccccTTcTTcTTGGGHHHHHHHHHTTcccEEcccHHHHHHcGGGcccEEcccGGGGTccccTTcccGGGTccccEEEEEEEEEEEEEcTTcEETTTTcEEccccEEEEEEcccTTTTccTTccTTcEEEEcccEEEcccccccccEEEEccTTccccTTcEEEEEcTTccHHHHHHHHTccHHHHHHcccTTcEEEEc DISOP:02AL 356-357| PSIPRED cccEEEEEEHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHccEEEEEEHHHHHHHHHccccccEEEEcccccHHHHHHHHHcccEEEEccHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEEcHHHHHcccHHcccEEEEEEEEEccccccccccccccccEEEEEEEEEEEEEEEccccEEccccEEEccccEEEEEEEccHHcccHHHcccccEEEEccEEEEEEcccccccEEEEcccccccccccEEEEEcccccHHHHHHHHcccHHHHHccccccccEEEc //