[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56767.1
DDBJ      :             tRNA-i(6)A37 modification enzyme MiaB
Swiss-Prot:MIAB_NITOC   RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB;         EC=2.-.-.-;AltName: Full=tRNA-i(6)A37 methylthiotransferase;

Homologs  Archaea  67/68 : Bacteria  791/915 : Eukaryota  105/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.1.15c.1.28
:447 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   145->341 2qgqA PDBj 9e-18 33.9 %
:RPS:PDB   54->385 3banB PDBj 2e-57 12.8 %
:RPS:SCOP  93->363 1qtwA  c.1.15.1 * 2e-42 12.1 %
:RPS:SCOP  380->441 1yezA1  b.40.4.12 * 5e-09 19.3 %
:HMM:SCOP  97->389 1oltA_ c.1.28.2 * 3.5e-61 31.4 %
:RPS:PFM   5->103 PF00919 * UPF0004 1e-16 44.2 %
:RPS:PFM   153->317 PF04055 * Radical_SAM 2e-10 35.1 %
:RPS:PFM   381->437 PF01938 * TRAM 8e-06 49.1 %
:HMM:PFM   151->325 PF04055 * Radical_SAM 1e-31 36.1 158/166  
:HMM:PFM   4->104 PF00919 * UPF0004 4.4e-31 49.0 98/98  
:HMM:PFM   380->440 PF01938 * TRAM 5.9e-16 37.3 59/61  
:BLT:SWISS 1->447 MIAB_NITOC 0.0 100.0 %
:PROS 151->171|PS01278|MTTASE_RADICAL

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56767.1 GT:GENE ABA56767.1 GT:PRODUCT tRNA-i(6)A37 modification enzyme MiaB GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 260991..262334 GB:FROM 260991 GB:TO 262334 GB:DIRECTION + GB:PRODUCT tRNA-i(6)A37 modification enzyme MiaB GB:PROTEIN_ID ABA56767.1 GB:DB_XREF GI:76882086 InterPro:IPR002792 InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197 LENGTH 447 SQ:AASEQ MAKKLYIKTHGCQMNEYDSSRMADVLRESHGLELTSDPEQAEVLLLNTCSVREKAQEKVFSQLGRWRQLKQSRPELVIGVGGCVASQEGETIRVRAPYVDLVFGPQTIHRLPAMLTQAKASSQPVVDLSFPEIEKFDKLPEPRAEGPTAFVSVMEGCSKYCSFCVVPYTRGEEISRPFDDVIAEIVGLAEQGVREITLLGQNVNAYRGSIGEGDTADLALLIHYVASIEGIERIRFTTSHPVEFSDSLIQAFAEVPALVSHLHLPVQSGSDRMLSLMKRGHTVLEYKAKLRKLRQVRPDISISSDFIVGLPGETEADFQATLALVDEVGFDHSFSFIYSPRPGTPAASLPDCTPIALKKERLAILQGRLRALEIAISRGMVDTVQQVLVERPSKKDPTMLAGRTANNRVVNFSASQDMVGQFVNIRITEALPNSLRGIVLDAKRRCA GT:EXON 1|1-447:0| SW:ID MIAB_NITOC SW:DE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; EC=2.-.-.-;AltName: Full=tRNA-i(6)A37 methylthiotransferase; SW:GN Name=miaB; OrderedLocusNames=Noc_0237; SW:KW 4Fe-4S; Complete proteome; Cytoplasm; Iron; Iron-sulfur;Metal-binding; S-adenosyl-L-methionine; Transferase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->447|MIAB_NITOC|0.0|100.0|447/447| GO:SWS:NREP 6 GO:SWS GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|4Fe-4S| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0051536|"GO:iron-sulfur cluster binding"|Iron-sulfur| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| PROS 151->171|PS01278|MTTASE_RADICAL|PDOC00984| BL:PDB:NREP 1 BL:PDB:REP 145->341|2qgqA|9e-18|33.9|177/266| RP:PDB:NREP 1 RP:PDB:REP 54->385|3banB|2e-57|12.8|321/349| RP:PFM:NREP 3 RP:PFM:REP 5->103|PF00919|1e-16|44.2|95/97|UPF0004| RP:PFM:REP 153->317|PF04055|2e-10|35.1|151/164|Radical_SAM| RP:PFM:REP 381->437|PF01938|8e-06|49.1|55/59|TRAM| HM:PFM:NREP 3 HM:PFM:REP 151->325|PF04055|1e-31|36.1|158/166|Radical_SAM| HM:PFM:REP 4->104|PF00919|4.4e-31|49.0|98/98|UPF0004| HM:PFM:REP 380->440|PF01938|5.9e-16|37.3|59/61|TRAM| GO:PFM:NREP 5 GO:PFM GO:0003824|"GO:catalytic activity"|PF00919|IPR013848| GO:PFM GO:0009451|"GO:RNA modification"|PF00919|IPR013848| GO:PFM GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|PF00919|IPR013848| GO:PFM GO:0003824|"GO:catalytic activity"|PF04055|IPR007197| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF04055|IPR007197| RP:SCP:NREP 2 RP:SCP:REP 93->363|1qtwA|2e-42|12.1|247/285|c.1.15.1| RP:SCP:REP 380->441|1yezA1|5e-09|19.3|57/68|b.40.4.12| HM:SCP:REP 97->389|1oltA_|3.5e-61|31.4|280/0|c.1.28.2|1/1|Radical SAM enzymes| OP:NHOMO 2065 OP:NHOMOORG 963 OP:PATTERN 1111111111111111111111111111-111112223322222123221111312111111111111 2332311111111111111-111121111111111111112222211211111111111122222222222111111133331333333333233322233333333313-------22222223333333333333333222222222222222222222222222222222212222212222233443222222222222222222222222222222221-------3222222222222222222221----------------------------------------------------------------------33333333333333343333333333222332333334334333333321233212223323333332233333333333323333-3333333323212222222222223333233333333332222222222222333111222222222222222222222222221333332222222222222222222222222222222222222222222222222222222222111111122222233333333333333233333333322422233333333333333333333333333322222222212112222211122221211211111121211111122222112222222222-2222222222222222222222221122222222222222222122122221-111111111111---31111122223121122222222112222222232222222222221222211112222211122121211112222211122222222222211111133333333--------32-------------------2------3334333343222 1111112-1-11111----------------------------------------------------------------------------------------111-1314822222222221242252AR3-6261221521222212221252322111523212222-42523334T444442223-253352223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 438 STR:RPRED 98.0 SQ:SECSTR HHccccccccEEccEEEEEccTTTTccGGGcccccHTTccHHHHHHHHHHHHHcEEEEEEEcccTTccccHHHHHTcTTccEEEETTEEccEccccccTTccccHHHHHHHHHHHHHTTcEEEEEcccccHHHHHTcTTHHHHHHHHHHHHHHTccEEEEcccccccccccccccccTTcccccEEccccccccccccHHHHHHHTccccHHHHHHHHHHHHHHHHHHHHHTTcEEEEEcccccccccTTcccccccHHHHHHHHHTcccTTEEEEEEHHHHTTcTTccHHHHHHHHcEEEEETTEEEEcGGGccccHHHHHHHHHHTTcEEEEEcccccccTTcccccGGGcHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcTEEETTEEEEEcTTccEEEEEccHHHHHHHHHccHHHcGGGcEEEc######### DISOP:02AL 445-447| PSIPRED cccEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHcccccEEEcccccccccccccccccccEEEEEEEcccccccccEEEEccEEcccEEccHHHHHHHHHHHHHccccEEEEEEcccEEEccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHccccccEEEEEEEcccHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccEEEEEcccccEEEEcccccccccEEEEEEEEEcccEEEEEEEccccccc //