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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56813.1
DDBJ      :             transcriptional regulator, XRE family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  75/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:102 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   48->95 2ppxA PDBj 1e-06 41.7 %
:RPS:PDB   46->101 2axuD PDBj 2e-08 23.1 %
:RPS:SCOP  44->99 2ppxA1  a.35.1.3 * 3e-14 35.7 %
:HMM:SCOP  35->80 2bnmA1 a.35.1.3 * 5e-08 39.1 %
:HMM:PFM   46->81 PF01381 * HTH_3 1.2e-12 47.2 36/55  
:BLT:SWISS 13->100 HIGA2_VIBCH 3e-11 37.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56813.1 GT:GENE ABA56813.1 GT:PRODUCT transcriptional regulator, XRE family GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(312416..312724) GB:FROM 312416 GB:TO 312724 GB:DIRECTION - GB:PRODUCT transcriptional regulator, XRE family GB:PROTEIN_ID ABA56813.1 GB:DB_XREF GI:76882132 InterPro:IPR001387 LENGTH 102 SQ:AASEQ MPLTEKELLERDAKRDIGAELLQSIRQMKAGNRGRVHYASISSVTEARHKVGLSQAQFAALLGVSKRTLQDWEQGRREPSGAAKSLLKIAKKRPDVLREIFS GT:EXON 1|1-102:0| BL:SWS:NREP 1 BL:SWS:REP 13->100|HIGA2_VIBCH|3e-11|37.5|88/104| BL:PDB:NREP 1 BL:PDB:REP 48->95|2ppxA|1e-06|41.7|48/61| RP:PDB:NREP 1 RP:PDB:REP 46->101|2axuD|2e-08|23.1|52/294| HM:PFM:NREP 1 HM:PFM:REP 46->81|PF01381|1.2e-12|47.2|36/55|HTH_3| RP:SCP:NREP 1 RP:SCP:REP 44->99|2ppxA1|3e-14|35.7|56/62|a.35.1.3| HM:SCP:REP 35->80|2bnmA1|5e-08|39.1|46/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 90 OP:NHOMOORG 76 OP:PATTERN -------------------------------------------------------------------- --1----------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------1---------------------1----1----------------1-----------11111111--------------------1-11-1--1-11-----------2111------1-----11-------------1---------1--1---2----------------1----------------------1-1-2---------------------------------------1-1---1------------------------2--1-------1----------------------------------------121-11-1111111----11------------------------------1-1---1-1-----------1-------------3-----2-2--1----1------------11--11111-------------------------------------1---------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------6------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 62 STR:RPRED 60.8 SQ:SECSTR ########################################ccHEEHHHHHTTccHHHHHTTHTTcHHHHHHHHHTcccccGGHHHHHHHHHHHTccHHHHHc DISOP:02AL 1-4| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHc //