[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56822.1
DDBJ      :             Secretion protein HlyD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  414/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
d.3.1f.46.1
:514 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   220->498 2v4dB PDBj 1e-15 31.4 %
:RPS:PDB   255->305 2dfsA PDBj 3e-04 20.0 %
:RPS:PDB   317->366 2ejmA PDBj 5e-07 18.0 %
:RPS:SCOP  259->498 1iu4A  d.3.1.8 * 3e-29 11.7 %
:HMM:SCOP  220->432 1vf7A_ f.46.1.1 * 4e-16 32.0 %
:RPS:PFM   291->362 PF00529 * HlyD 2e-06 36.8 %
:HMM:PFM   220->491 PF00529 * HlyD 2.1e-13 22.6 266/306  
:BLT:SWISS 159->205 OXAA_PSEA6 1e-04 47.7 %
:BLT:SWISS 176->491 MACA_ECOLI 6e-19 30.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56822.1 GT:GENE ABA56822.1 GT:PRODUCT Secretion protein HlyD GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 320380..321924 GB:FROM 320380 GB:TO 321924 GB:DIRECTION + GB:PRODUCT Secretion protein HlyD GB:PROTEIN_ID ABA56822.1 GB:DB_XREF GI:76882141 InterPro:IPR006143 LENGTH 514 SQ:AASEQ MKILRFGLLGSLFLLAACSAGRESPQEGTPELGGISITDFTDKTELFVEFLPLVVGQESAFAVHLTQLEGFLPMAQGRVIVFLGGGDLPLEKFVADGSQVPRIFRPIVKPQNPGRRQLAIRLVAPAFTVTHFLGGVTVYPDLKTAAHAHPPEAEKERGITFLLEQQWQVDFALEAVRPHTLRESVAATGVVRPRSDGEVWIHAPTAGHLLTHGSDFPQVGMAVTQGQILAQIAPRMAGEADFASLQLAVQKGHSQYQFAAHERQRLEDLFKQNAMPKHRLIEARKEETIAKAELEAAQRRLAQYQVLSSGTLVGVPVRAPIKGLLTQVQVTAGSYLATGQALFHVVQTDRLWLEARIAEADLGRLHDPTAAWFEVEGFEQPFRIGPAQGARRVTFSMEVDEVSRTTPLVFEFPNPNPALRIGMFAQVHVLTGKKVHDLTVPRSALVDHNGQVVVYVLLGGESFERRSVQLGIRDGNYAQVREGLSAGERIVTHGAYLVHLAAASPAAPGHGHAH GT:EXON 1|1-514:0| BL:SWS:NREP 2 BL:SWS:REP 159->205|OXAA_PSEA6|1e-04|47.7|44/543| BL:SWS:REP 176->491|MACA_ECOLI|6e-19|30.5|298/371| TM:NTM 1 TM:REGION 1->19| SEG 4->21|lrfgllgslfllaacsag| SEG 145->154|aahahppeae| SEG 501->513|aaaspaapghgha| BL:PDB:NREP 1 BL:PDB:REP 220->498|2v4dB|1e-15|31.4|258/327| RP:PDB:NREP 2 RP:PDB:REP 255->305|2dfsA|3e-04|20.0|50/994| RP:PDB:REP 317->366|2ejmA|5e-07|18.0|50/99| RP:PFM:NREP 1 RP:PFM:REP 291->362|PF00529|2e-06|36.8|68/259|HlyD| HM:PFM:NREP 1 HM:PFM:REP 220->491|PF00529|2.1e-13|22.6|266/306|HlyD| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 1 RP:SCP:REP 259->498|1iu4A|3e-29|11.7|231/331|d.3.1.8| HM:SCP:REP 220->432|1vf7A_|4e-16|32.0|194/237|f.46.1.1|1/1|HlyD-like secretion proteins| OP:NHOMO 1209 OP:NHOMOORG 417 OP:PATTERN -------------------------------------------------------------------- 527--------------------------------------------------------------------------------2--116753-522----13-6263835--------------2-11121-112-----------12-111-------111111-6-2---1-1---1-11--------2----------------------------------------2--------------------------------------------------------------------------------------------21-1-----------------------1--3111221111---------3222113-1-112164695632321111111-111--AF45B5B6123-233322212213-9452--31-111-----------222--34------------------------------2--5112123333433211114433323413334465D--5852-264732421679395421-------43532711-13-21-12111-262536443123235-5---------1-----------2--145352242434315465442464435634445--17213------3322-224444444444-4454444444444444445232-32142211222112122212343221241-322232222232---4-----134473521221---1-------111111-1---41564531434366232-2----------111212222222223333432222------2-33--11--------------------------------------1--------5- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1----------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 317 STR:RPRED 61.7 SQ:SECSTR ################################################################################################################################################################################cEEEEcccEEEEEEEEEEE##EEEEcccccEEccEEcc###cTTcEEcTTcEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTcEEEEEEEETTEEEEEEEEcccccccccccccEccccccEEEEEEcccTTEEEccccEEEEEEccccEEEEEccccEEEEEEcEEEEEEEEEEEEETTTTTEEEEEEEEEEccEEETTEEEEEEEEEEEEEccccEEEEEEEEEEEETTEEEEEEEEEEGGcEETTTEEEEEEEcTTccEEEEEEccccccTTEEEccccccTTcEEEEETTTcc################ DISOP:02AL 20-31, 97-119, 141-165, 499-514| PSIPRED ccEEEHHHHHHHHHHHHHHcccccccccccccccEEEEccccHHHHHHHHHHHHcccccEEEEEEEHHHcccHHHccEEEEEEccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccEEEEEEEccEEEEEEEEEEEEEEccccEEEEEEcccEEEEEEEEHccccccEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccEEEEEEEEEccccEEcccccEEEEEEccEEEEEEEEcHHHHHHHccccEEEEEEEcccccccccccccEEEEEEEcEEcccEEEEEEEEEEEccccccccccEEEEEEEEcccccEEEEEHHHEEEccccEEEEEEEcccEEEEEEEEEEEEcccEEEEEEccccccEEEEcccEEEcccccccccccccccc //