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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56826.1
DDBJ      :             Cytochrome c1
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  172/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.3.1
:240 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   36->236 3cwbD PDBj 2e-08 30.5 %
:RPS:PDB   32->239 3cwbD PDBj 1e-40 25.5 %
:RPS:SCOP  32->204 1bccD2  a.3.1.3 * 8e-37 25.3 %
:HMM:SCOP  15->204 1bccD2 a.3.1.3 * 2.8e-48 39.4 %
:RPS:PFM   36->239 PF02167 * Cytochrom_C1 8e-34 47.8 %
:HMM:PFM   32->239 PF02167 * Cytochrom_C1 6.6e-64 40.2 189/219  
:HMM:PFM   1->60 PF06954 * Resistin 0.00027 23.7 59/109  
:BLT:SWISS 27->240 CY1_CHRVI 1e-61 50.9 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56826.1 GT:GENE ABA56826.1 GT:PRODUCT Cytochrome c1 GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(326375..327097) GB:FROM 326375 GB:TO 327097 GB:DIRECTION - GB:PRODUCT Cytochrome c1 GB:PROTEIN_ID ABA56826.1 GB:DB_XREF GI:76882145 InterPro:IPR002326 LENGTH 240 SQ:AASEQ MKRMTTCLLLFISSTSLVWAASSNYPLDTVEININDKASLQRGAQVFMNYCLSCHSAKYMRYSRMAQDLGLTEQEVTDNLMFTTDKIHDPMTIAMQSKDSEGWFGVTPPDLSLVARSRGPEWLHTYLRTFYLDPSRPTGVNNLVFKDTAMPHVLWPLQGWQELADKDSDTSSTKLELAVAGTLSPSEYEKMLDDLVNFMTYMGEPARLEREKLGPWVLFYIALFCGVAYFLKREYWKDIH GT:EXON 1|1-240:0| BL:SWS:NREP 1 BL:SWS:REP 27->240|CY1_CHRVI|1e-61|50.9|214/244| TM:NTM 2 TM:REGION 4->25| TM:REGION 212->231| BL:PDB:NREP 1 BL:PDB:REP 36->236|3cwbD|2e-08|30.5|174/241| RP:PDB:NREP 1 RP:PDB:REP 32->239|3cwbD|1e-40|25.5|188/241| RP:PFM:NREP 1 RP:PFM:REP 36->239|PF02167|8e-34|47.8|184/213|Cytochrom_C1| HM:PFM:NREP 2 HM:PFM:REP 32->239|PF02167|6.6e-64|40.2|189/219|Cytochrom_C1| HM:PFM:REP 1->60|PF06954|0.00027|23.7|59/109|Resistin| GO:PFM:NREP 3 GO:PFM GO:0005506|"GO:iron ion binding"|PF02167|IPR002326| GO:PFM GO:0009055|"GO:electron carrier activity"|PF02167|IPR002326| GO:PFM GO:0020037|"GO:heme binding"|PF02167|IPR002326| RP:SCP:NREP 1 RP:SCP:REP 32->204|1bccD2|8e-37|25.3|154/195|a.3.1.3| HM:SCP:REP 15->204|1bccD2|2.8e-48|39.4|170/195|a.3.1.3|1/1|Cytochrome c| OP:NHOMO 179 OP:NHOMOORG 176 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11---1------1--------------1--1------------------1-----------------------------------------------------------1-----11111111111111111111111111111111111111111111111111111-11111111111111111---------------------------------------------------------2211-111111111111111111111111111---1111--------------------------------------------------------------------------------------------1-----1111111------------------------1111111111111111111------------11111111111111111111111111111111-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------2------1------------------------------------------1----1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 219 STR:RPRED 91.2 SQ:SECSTR ##################cccTTccTTcc##TccccHHHHHHHHHHHHHTGGGTcccTTccHHHHHcTTTccHHHHccccEEEEccTTcccccccccHHHHTTTTccccccccHHHHcTHHHHHHHHHHcccccTcTTcEEccccTTcEcccccccEEcccccccEEcccccccTTccccTTcccccHHHHHHHHHHHHHHHHcTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH# PSIPRED cHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHccccccccccccccccccHHHHHcccccccccccEEEEcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc //