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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56830.1
DDBJ      :             aspartyl-tRNA synthetase
Swiss-Prot:SYD_NITOC    RecName: Full=Aspartyl-tRNA synthetase;         EC=6.1.1.12;AltName: Full=Aspartate--tRNA ligase;         Short=AspRS;

Homologs  Archaea  68/68 : Bacteria  907/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.72.1d.104.1
:595 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->593 1eqrA PDBj e-176 53.1 %
:RPS:PDB   1->589 1c0aA PDBj 3e-99 50.6 %
:RPS:SCOP  1->393 1gc5A  c.72.1.3 * 2e-50 11.5 %
:RPS:SCOP  406->589 1c0aA3  d.104.1.1 * 3e-27 40.8 %
:HMM:SCOP  1->107 1c0aA1 b.40.4.1 * 1.3e-37 51.9 %
:HMM:SCOP  110->589 1c0aA3 d.104.1.1 * 1.1e-113 40.1 %
:RPS:PFM   18->84 PF01336 * tRNA_anti 9e-09 42.2 %
:RPS:PFM   142->311,406->561 PF00152 * tRNA-synt_2 1e-46 61.0 %
:RPS:PFM   315->410 PF02938 * GAD 3e-24 58.7 %
:HMM:PFM   121->562 PF00152 * tRNA-synt_2 3.6e-126 61.9 312/323  
:HMM:PFM   18->96 PF01336 * tRNA_anti 7.8e-20 41.8 67/76  
:BLT:SWISS 1->595 SYD_NITOC 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56830.1 GT:GENE ABA56830.1 GT:PRODUCT aspartyl-tRNA synthetase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 330232..332019 GB:FROM 330232 GB:TO 332019 GB:DIRECTION + GB:PRODUCT aspartyl-tRNA synthetase GB:PROTEIN_ID ABA56830.1 GB:DB_XREF GI:76882149 InterPro:IPR002312 InterPro:IPR002314 InterPro:IPR004115 InterPro:IPR004364 InterPro:IPR004365 InterPro:IPR004524 InterPro:IPR006195 LENGTH 595 SQ:AASEQ MRSHYCGELSEAHLDQSVTLCGWVNRRRDHGGVIFIDLRDREGLIQLVFDPEYSPESFRHAEQIRSEYVLQVKGRVQHRPEGTENPDLKTGQVEVLGQELILLNASETPPFPVDEKLEVGEDIRLRYRYIDLRRPESLQRLRFRSAIIRQLRKFLDERGFLDIDTPILTQSTPEGARDFLVPSRTHPGQFFALPQSPQLFKQLLMVAGVDRYYQVVRCFRDEDLRADRQPEFTQLDIEASFLHEETLMALMEEMFKELFATVLEVPLHTPFVRMPYAEALACFGLDKPDLRIPLRLVEVGDLMKTVDFKVFAQPAQDRDGRVAALRLPGGGKLSRKEIEEYTQFVAIYGAKGLAYIKVVERSRGREGLQSPILKFLPDEVIGAMLERTEAENGDIVFFGADKASIVNESLGALRVKLGHDHGLVEHGWSPLWVIDFPMFEWDEDDHRWHALHHPFTSPKEEDLSLLEQNPGACRSRAYDLVLNGTEVGGGSIRISQSQVQSQVFRLLGIGDEEAQDKFGFLLDALKYGCPPHGGIAFGLDRLVMLMTGSASIREVIPFPKTQTAACPLTGAPGQVAEAQLRELGIGVRRLASDKV GT:EXON 1|1-595:0| SW:ID SYD_NITOC SW:DE RecName: Full=Aspartyl-tRNA synthetase; EC=6.1.1.12;AltName: Full=Aspartate--tRNA ligase; Short=AspRS; SW:GN Name=aspS; OrderedLocusNames=Noc_0302; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->595|SYD_NITOC|0.0|100.0|595/595| GO:SWS:NREP 6 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| SEG 122->134|dirlryryidlrr| SEG 487->503|vgggsirisqsqvqsqv| BL:PDB:NREP 1 BL:PDB:REP 1->593|1eqrA|e-176|53.1|588/590| RP:PDB:NREP 1 RP:PDB:REP 1->589|1c0aA|3e-99|50.6|585/585| RP:PFM:NREP 3 RP:PFM:REP 18->84|PF01336|9e-09|42.2|64/74|tRNA_anti| RP:PFM:REP 142->311,406->561|PF00152|1e-46|61.0|300/337|tRNA-synt_2| RP:PFM:REP 315->410|PF02938|3e-24|58.7|92/96|GAD| HM:PFM:NREP 2 HM:PFM:REP 121->562|PF00152|3.6e-126|61.9|312/323|tRNA-synt_2| HM:PFM:REP 18->96|PF01336|7.8e-20|41.8|67/76|tRNA_anti| GO:PFM:NREP 11 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01336|IPR004365| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00152|IPR004364| GO:PFM GO:0005524|"GO:ATP binding"|PF00152|IPR004364| GO:PFM GO:0005737|"GO:cytoplasm"|PF00152|IPR004364| GO:PFM GO:0006412|"GO:translation"|PF00152|IPR004364| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF02938|IPR004115| GO:PFM GO:0005524|"GO:ATP binding"|PF02938|IPR004115| GO:PFM GO:0005737|"GO:cytoplasm"|PF02938|IPR004115| GO:PFM GO:0006412|"GO:translation"|PF02938|IPR004115| RP:SCP:NREP 2 RP:SCP:REP 1->393|1gc5A|2e-50|11.5|355/467|c.72.1.3| RP:SCP:REP 406->589|1c0aA3|3e-27|40.8|184/346|d.104.1.1| HM:SCP:REP 1->107|1c0aA1|1.3e-37|51.9|106/0|b.40.4.1|1/1|Nucleic acid-binding proteins| HM:SCP:REP 110->589|1c0aA3|1.1e-113|40.1|347/0|d.104.1.1|1/1|Class II aaRS and biotin synthetases| OP:NHOMO 2793 OP:NHOMOORG 1172 OP:PATTERN 11212122222222222333233111111111111111111112212211222122222222221122 3322221111121232222-22332122222212222233211221121--1211211112222323111222222221222122222111122221-11111111323212222222112222221222222222333332233223322232222222222122233232222222222222333322233344444434344444433333344433323333333333233333333333333233333332433433133333333323333323333333444333333333333333333333333433333333313244444334334222222222412223333222333222222222312222111111111111111111111111111111111-111111111112222222222222111111111111111111111111111111121111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222132222222222222322333323333223332223223333234422-222222222222222222222211222222222222222222211112122122212122222222233233334444445444-44444444444444444443332232222222222222222222333333432222222222222223222222333322222222222222222322222222222222222222222222222222222222222222222222112222222222222222222223333331111111111222222-21232222223322312223233323222222 2111343-84311342222344434343434244433334344333233345462333322255545335334444334445445543-47222422221223434141545733372234242661728N417771211623553221342352534322233433444745313344V4432253782423353332 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 593 STR:RPRED 99.7 SQ:SECSTR cccccGGGccGGGTTcEEEEEEEEEEEEEccccEEEEEEETTEEEEEEEcGGcGHHHHHHHTTccTTcEEEEEEEEEEccTTTccTTcTTTTEEEEEEEEEEEEccccccccTTccccHHHHHHTHHHHTTccEHHHHHHHHHHHHHHHHHHHHHHHTTcEEcccccccccccccccccEEEccccTTcEEEcccccHHHHHHHHHTTccEEEEEEEEEccccccTTcccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccHcccEEEHHHHHHHHccccccTTccccEEEcHHHHTTcccHHHHHHHHcTTEEEEEEEETTGGGccHHHHHHHHHHHHHTTcccccEEEEccGGGGGGGEEcTTGGGccHHHHHHHHHHTTccTTcEEEEEEEEHHHHHHHHHHHHHHHHHHTTccccccccEEEEEccccEEEcccccEEEcccTTcccccccHHHHHHccTTccccEEEEEETTEEEEEEEEccccHHHHHHHHHHTTccHHHHHHHHHHHHHHTTTTcccEEEEEEEHHHHHHHHHTcccGGGGccccccTTcccTTTTccccccHHHHHHTTccccccccc## DISOP:02AL 591-595| PSIPRED cccccHHHccHHHcccEEEEEEEEEEEcccccEEEEEEEcccEEEEEEEEccccHHHHHHHHHccccEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEEccccccccccccccccccEEEcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEccccccccccEEEEEcccccEEEEcccHHHHHHHHHHHccccEEEEEEEEEcccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccHHHcccHHHccccHHHHHHHHHHHccccccEEEEEccccHHHHHHccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEcccccccccccHHHHHccccccEEEEEEEEEccEEEccccEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccEEEccccccccccccccccccccHHHHHHccEEEEccccccc //