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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56839.1
DDBJ      :             type II secretion system protein F
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  509/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
:406 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   61->171 2vmbA PDBj 1e-17 32.4 %
:BLT:PDB   273->362 2vmbA PDBj 2e-07 28.6 %
:RPS:PDB   59->171 3c1qA PDBj 4e-19 30.0 %
:RPS:PDB   264->374 3c1qA PDBj 2e-13 22.5 %
:RPS:PFM   74->175 PF00482 * GSPII_F 4e-12 34.3 %
:RPS:PFM   278->397 PF00482 * GSPII_F 1e-16 35.8 %
:HMM:PFM   72->195 PF00482 * GSPII_F 1e-33 36.3 124/124  
:HMM:PFM   277->398 PF00482 * GSPII_F 2.9e-33 32.0 122/124  
:BLT:SWISS 4->406 TAPC_AERHY e-109 49.1 %
:PROS 167->195|PS00874|T2SP_F
:TM
:REPEAT 2|23->162|229->366
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56839.1 GT:GENE ABA56839.1 GT:PRODUCT type II secretion system protein F GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(336895..338115) GB:FROM 336895 GB:TO 338115 GB:DIRECTION - GB:PRODUCT type II secretion system protein F GB:PROTEIN_ID ABA56839.1 GB:DB_XREF GI:76882158 InterPro:IPR001992 InterPro:IPR003004 LENGTH 406 SQ:AASEQ MAQAAAKQQIFIWEGANRQGHKIKGEVGGKNLSMVKADLRRQGIVPLKVRKKPKSLLGQRKKKITPKEIAIFSRQLATMMAAGVPLVQAFEIIGRGHESISMQEMVLKIKGEVEGGGTLAEALKQHPRQFDPLFCNLVHAGEQSGTLETLLDKIAMYKEKTEAIKGKIKKALFYPTAVVVVAFIITAILLIFVIPQFEALFQNFGADLPALTLLVLKLSALFQEWWWAIFGAMGGAIYGLMEAKRRSQKINHLFDRLLLKLPVIGEILNKATIARYARTLSTMFAAGVPLVEAMVSVAGAAGNSVYTQAILRIRDEVSTGTQLQAAMRSSQLFPNMVVQMVAIGEEAGSIDQMLSKVADFYEEEVDNAVDALSSLLEPLIMAILGVLVGGLVIAMYLPIFKMGSVV GT:EXON 1|1-406:0| BL:SWS:NREP 1 BL:SWS:REP 4->406|TAPC_AERHY|e-109|49.1|403/413| PROS 167->195|PS00874|T2SP_F|PDOC00682| TM:NTM 5 TM:REGION 175->197| TM:REGION 201->223| TM:REGION 225->243| TM:REGION 280->302| TM:REGION 375->397| NREPEAT 1 REPEAT 2|23->162|229->366| SEG 176->194|tavvvvafiitaillifvi| SEG 206->221|adlpaltllvlklsal| BL:PDB:NREP 2 BL:PDB:REP 61->171|2vmbA|1e-17|32.4|111/121| BL:PDB:REP 273->362|2vmbA|2e-07|28.6|90/121| RP:PDB:NREP 2 RP:PDB:REP 59->171|3c1qA|4e-19|30.0|110/111| RP:PDB:REP 264->374|3c1qA|2e-13|22.5|109/111| RP:PFM:NREP 2 RP:PFM:REP 74->175|PF00482|4e-12|34.3|102/124|GSPII_F| RP:PFM:REP 278->397|PF00482|1e-16|35.8|120/124|GSPII_F| HM:PFM:NREP 2 HM:PFM:REP 72->195|PF00482|1e-33|36.3|124/124|GSPII_F| HM:PFM:REP 277->398|PF00482|2.9e-33|32.0|122/124|GSPII_F| OP:NHOMO 904 OP:NHOMOORG 512 OP:PATTERN -------------------------------------------------------------------- 122-------------------------------------1---1---1----1--------1-----------------2-122311-------------11---1-11111111111111111----------------111--111111111111-111112211111-1--1-11--1-1112122111----------------1--------111--11-------1--------------------------------------------------------------------------1-111-1---------11111111111-21112221111-11-1-1123113221221111111111231111-----111121---1--1--------------1-21---1--1-----1------1112-------------------11-1--1-----------------------------1-111-11--12222232222222222222223322223212243232232232321354442111111112224342333121--22111-33333335322222232-1111-111-1-1-------1132211322344334323333333333333333343--12223------21231122222233313-222222322223232233222222111111111111111111122211111--312222222222--12111--22222231-11111111111111-2322212121233444423423234223211111111122333333333333333333332222222--1-111111------------------------------------11-1111111-31 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------3-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 224 STR:RPRED 55.2 SQ:SECSTR ##########################################################cccccccHHHHHHHHHHHHHHHHTTccHHHHHHHHHHTcccHHHHHHHHHHHHHHHTTccHHHHHTTcTTTccHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHTTc############################################################################################ccccccHHHHHHHHHHHHHHHHTTccHHHHHHHHHHTcccHHHHHHHHHHHHHHHTTccHHHHHTTcTTTccHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHTTc################################ DISOP:02AL 1-3, 49-65| PSIPRED cccccccEEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHcccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc //