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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56846.1
DDBJ      :             tyrosine recombinase XerC subunit
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  821/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.60.9d.163.1
:300 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->289 1a0pA PDBj 2e-30 35.7 %
:RPS:PDB   8->291 3crxA PDBj 1e-35 13.8 %
:RPS:SCOP  8->291 1p7dA  d.163.1.1 * 1e-25 15.5 %
:HMM:SCOP  4->102 1a0pA1 a.60.9.1 * 2.6e-19 34.7 %
:HMM:SCOP  108->294 4crxA2 d.163.1.1 * 4.5e-50 42.5 %
:RPS:PFM   9->91 PF02899 * Phage_integr_N 1e-15 45.8 %
:RPS:PFM   131->280 PF00589 * Phage_integrase 9e-28 48.3 %
:HMM:PFM   115->283 PF00589 * Phage_integrase 7.6e-43 38.3 167/173  
:HMM:PFM   9->91 PF02899 * Phage_integr_N 4e-24 45.8 83/84  
:BLT:SWISS 9->299 XERC_PSEU2 1e-91 57.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56846.1 GT:GENE ABA56846.1 GT:PRODUCT tyrosine recombinase XerC subunit GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 343746..344648 GB:FROM 343746 GB:TO 344648 GB:DIRECTION + GB:PRODUCT tyrosine recombinase XerC subunit GB:PROTEIN_ID ABA56846.1 GB:DB_XREF GI:76882165 InterPro:IPR002104 InterPro:IPR004107 InterPro:IPR011931 LENGTH 300 SQ:AASEQ MEEEQQIWIQKFFTHLQYERGLSPQTVVSYRRDLAKAIAFCGRNGIGNWQELDAQRVRALVVAHHQAGLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPKGKRALPPSLDVDQTAQLLNTQPCSDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKTREVPLGRRAKVALLAWLPVRAGWINQSQEAVFITRHGRRLSPRAVQKRLRLWGLRQGFDVAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKIYDQTHPRARKKR GT:EXON 1|1-300:0| BL:SWS:NREP 1 BL:SWS:REP 9->299|XERC_PSEU2|1e-91|57.4|289/299| BL:PDB:NREP 1 BL:PDB:REP 9->289|1a0pA|2e-30|35.7|255/271| RP:PDB:NREP 1 RP:PDB:REP 8->291|3crxA|1e-35|13.8|283/323| RP:PFM:NREP 2 RP:PFM:REP 9->91|PF02899|1e-15|45.8|83/84|Phage_integr_N| RP:PFM:REP 131->280|PF00589|9e-28|48.3|147/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 115->283|PF00589|7.6e-43|38.3|167/173|Phage_integrase| HM:PFM:REP 9->91|PF02899|4e-24|45.8|83/84|Phage_integr_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 1 RP:SCP:REP 8->291|1p7dA|1e-25|15.5|271/280|d.163.1.1| HM:SCP:REP 4->102|1a0pA1|2.6e-19|34.7|98/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 108->294|4crxA2|4.5e-50|42.5|186/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 2410 OP:NHOMOORG 861 OP:PATTERN 111111111111111-2---------------111----422-11112--1---1111111112---- 22G2323222223323522-23223222222293344428228512222222324242223362345-3-3222226632223--111344422222--52837332232222222222222222232343222321111124632D371-1----1------31-23261-------------21122323323434423534543363333222347579244322242433222222222222222222223333333433224433332222225111111111132223323233111111111111111111121114943343235234424233232223313218564388361643222431233E622222222223223222323222222222222-322233232D23222622ED2234222227222222322333333337222232222222222222222222222222222222-322422222734425322222435F22222238423B8222345433323733222733322-2222222434E332264-22424433232235323442332232412211111111111111111212126524246--23343465242423342424234--24333------43442334447455624-422674446245533333258582DH42222252222232225742233322-222232222232---2---------2222-3322222222122223333422222332352333323333377722222222223347333433335522233333332222--33332222--------422---------1--------1------1111111111262 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 292 STR:RPRED 97.3 SQ:SECSTR #######HHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHHHTccccccccHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTTcccGGGcHHHHHHHHHHHHHHHHTTcccHHHHHHHHHcccccHHHHHHHHHHHHHHHTccHHHHHHcccTTEEEccccccccccccccccccccHHHHHHHHHHHEEcTTccEEccccccccHHHHHHHHHHHHHHHHcccccccccccccTTHHHHHHHHHHHHTcccHHHHHHHTTcccHHHHHHHcTTccccccHHHHHGGTHHHHH# DISOP:02AL 1-4, 295-300| PSIPRED ccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHcccHHHEEccccEEEEEEccccEEEEEccHHHHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHcHHHHccc //