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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56879.1
DDBJ      :             periplasmic or secreted lipoprotein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  260/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:200 amino acids
:PSIPRED
:DISOPRED
:HMM:PFM   58->116 PF04972 * BON 1.6e-17 37.9 58/64  
:HMM:PFM   132->187 PF04972 * BON 3.3e-14 42.9 56/64  
:BLT:SWISS 40->193 YRAP_ECOLI 8e-27 34.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56879.1 GT:GENE ABA56879.1 GT:PRODUCT periplasmic or secreted lipoprotein GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(387074..387676) GB:FROM 387074 GB:TO 387676 GB:DIRECTION - GB:PRODUCT periplasmic or secreted lipoprotein GB:PROTEIN_ID ABA56879.1 GB:DB_XREF GI:76882198 InterPro:IPR007055 LENGTH 200 SQ:AASEQ MKLSLTILLFCFIIIFQGCVAVVATGVAAGAATGVSTAYDRRTFNTVIDDQSIELKASAALRNDQELHENTHINVTSYNGIVLLTGEAPSKELKKKAAELVKPISDVKQIYNEVDILAPSSLVSRSSDSWITTKVKTKMTARKGLNPARIKVVTERGTVYLMGLVTPQEAERAVAVTSHTGGTQRVVKIFEYLHETALEQ GT:EXON 1|1-200:0| BL:SWS:NREP 1 BL:SWS:REP 40->193|YRAP_ECOLI|8e-27|34.4|154/191| TM:NTM 1 TM:REGION 10->32| SEG 3->16|lsltillfcfiiif| SEG 20->38|vavvatgvaagaatgvsta| SEG 91->100|kelkkkaael| HM:PFM:NREP 2 HM:PFM:REP 58->116|PF04972|1.6e-17|37.9|58/64|BON| HM:PFM:REP 132->187|PF04972|3.3e-14|42.9|56/64|BON| OP:NHOMO 266 OP:NHOMOORG 260 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------11111111111111111111111111111111111111111111111111111111111111111112112-----------------------------------------------------------1111-1111111111111111111111111--11---------11111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111112222-1-1-111111111111111111111-1111111111111111111111----------11111111111111--------------111-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 195-200| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccHHEEcHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHccHHHHHHHHHHHHHHcccccccEEEEEEEccEEEEEEEEcHHHHHHHHHHHHccccHHHHHHHHEEcccccccc //