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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56893.1
DDBJ      :             Holliday junction resolvase YqgF
Swiss-Prot:RUVX_NITOC   RecName: Full=Putative Holliday junction resolvase;         EC=3.1.-.-;

Homologs  Archaea  0/68 : Bacteria  547/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:152 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->146 1ovqA PDBj 4e-34 50.4 %
:RPS:SCOP  14->144 1vhxA  c.55.3.8 * 3e-42 31.3 %
:HMM:SCOP  12->148 1nu0A_ c.55.3.8 * 3.6e-39 38.7 %
:RPS:PFM   16->144 PF03652 * UPF0081 4e-27 45.7 %
:HMM:PFM   15->145 PF03652 * UPF0081 9.6e-45 40.5 131/135  
:BLT:SWISS 1->152 RUVX_NITOC 5e-87 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56893.1 GT:GENE ABA56893.1 GT:PRODUCT Holliday junction resolvase YqgF GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(400408..400866) GB:FROM 400408 GB:TO 400866 GB:DIRECTION - GB:PRODUCT Holliday junction resolvase YqgF GB:PROTEIN_ID ABA56893.1 GB:DB_XREF GI:76882212 InterPro:IPR005227 InterPro:IPR006641 LENGTH 152 SQ:AASEQ MSATLDAPSPSKPRIVLGFDFGLRYIGVAVGQEVTHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLLIVGLPLNMDQSEQFLTKAARRFGHRLHGRYGLAVEWVDERLSTVEARERLNIKSSASGRRQGIDQMAAQCILQTWLTEQQTIRH GT:EXON 1|1-152:0| SW:ID RUVX_NITOC SW:DE RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; SW:GN OrderedLocusNames=Noc_0367; SW:KW Complete proteome; Cytoplasm; DNA damage; DNA recombination;DNA repair; Hydrolase; Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->152|RUVX_NITOC|5e-87|100.0|152/152| GO:SWS:NREP 6 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006310|"GO:DNA recombination"|DNA recombination| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| BL:PDB:NREP 1 BL:PDB:REP 16->146|1ovqA|4e-34|50.4|131/138| RP:PFM:NREP 1 RP:PFM:REP 16->144|PF03652|4e-27|45.7|129/134|UPF0081| HM:PFM:NREP 1 HM:PFM:REP 15->145|PF03652|9.6e-45|40.5|131/135|UPF0081| GO:PFM:NREP 5 GO:PFM GO:0005737|"GO:cytoplasm"|PF03652|IPR005227| GO:PFM GO:0006281|"GO:DNA repair"|PF03652|IPR005227| GO:PFM GO:0006310|"GO:DNA recombination"|PF03652|IPR005227| GO:PFM GO:0006974|"GO:response to DNA damage stimulus"|PF03652|IPR005227| GO:PFM GO:0016788|"GO:hydrolase activity, acting on ester bonds"|PF03652|IPR005227| RP:SCP:NREP 1 RP:SCP:REP 14->144|1vhxA|3e-42|31.3|131/140|c.55.3.8| HM:SCP:REP 12->148|1nu0A_|3.6e-39|38.7|137/0|c.55.3.8|1/1|Ribonuclease H-like| OP:NHOMO 549 OP:NHOMOORG 548 OP:PATTERN -------------------------------------------------------------------- 111-----111-1-----------------------1-----1----1------------------------------1-11---1---------------------------------------------------1111111---1111111111-----11-1-1111----111-1-11------1-111111111111111111111111111111111-------111--111111111-1111111-11111111111111111111111111111111111-111111111111111111111111111111111-11111111111111-1111111---1-1111-11111-11-1111-1------11-1111111-1-11------------------111111111---------------1---11111111111-----------1--1-----------1------------------------111111111111111111111111111111111111111111111111-1111111111111111111111-----11---1---1---------11111-1--------------------------11111111111111111111111111111111---111111-11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111------------------------------------------------------111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 131 STR:RPRED 86.2 SQ:SECSTR ###############EEEEEEETTEEEEEEEETTTTEEEEEccccccTTcccHHHHHHHHHHTcEEEEEEcccccccccccTTHHHHHHHHHHHHHHHTccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHH###### DISOP:02AL 1-3, 5-7, 119-130, 147-152| PSIPRED cEEcccccccccccEEEEEEccccEEEEEEEccccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccc //