Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56914.1
DDBJ : transposase
Swiss-Prot:
Homologs Archaea 26/68 : Bacteria 194/915 : Eukaryota 0/199 : Viruses 1/175 --->[See Alignment]
g.72.1
:373 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB 98->205 3ee7B PDBj 1e-12 7.5 %
:RPS:SCOP 301->349 1wj0A g.72.1.1 * 5e-07 12.2 %
:RPS:PFM 1->42 PF12323 * HTH_14 1e-06 47.6 %
:RPS:PFM 70->280 PF01385 * Transposase_2 2e-30 35.5 %
:RPS:PFM 293->357 PF07282 * Transposase_35 8e-10 47.7 %
:HMM:PFM 65->277 PF01385 * Transposase_2 2.9e-38 23.2 211/227
:HMM:PFM 291->359 PF07282 * Transposase_35 1e-22 43.5 69/69
:HMM:PFM 1->42 PF12323 * HTH_14 4.2e-15 45.2 42/46
:BLT:SWISS 2->362 YDCM_ECOLI 6e-34 30.0 %
:PROS 277->287|PS00048|PROTAMINE_P1
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56914.1
GT:GENE ABA56914.1
GT:PRODUCT transposase
GT:DATABASE GIB00281CH01
GT:ORG noce0
GB:ACCESSION GIB00281CH01
GB:LOCATION 428172..429293
GB:FROM 428172
GB:TO 429293
GB:DIRECTION +
GB:PRODUCT transposase
GB:PROTEIN_ID ABA56914.1
GB:DB_XREF GI:76882233 InterPro:IPR000221 InterPro:IPR001959 InterPro:IPR010095
LENGTH 373
SQ:AASEQ MINAFKYRLYPNAHQARELETMLETHRRLYNECLAQRKERYEIAQKSVKYTQQSAWFKSERGVNEWYARLNFSSAQATMRRLDKAFQAFFRRIKAGEKPGYPRFKARGRFDSWTYPAHGDGARLLDGQLRLQHVGLVKVRQHRPVEGAVKTVQVKNEAGKWFVIASCNIGDGPAPRAEDTSVGLDVGLAYFLSTDQGEHVDNPRYQKEALRQLRIAGRAVSRKRKGGRNRAKAVARLRAIHARVANKRRDYHHKVARDLVSRYAFIAAESLTVSNMVRNRRLSRSISDAGWRQFLNILRAKAESAGSVWVEVPPQGTSQACSGCDTLVRKSLSVRQHHCPECGLRLQRDVNAARNILARGQARMEPVRLNVAQ
GT:EXON 1|1-373:0|
BL:SWS:NREP 1
BL:SWS:REP 2->362|YDCM_ECOLI|6e-34|30.0|353/402|
PROS 277->287|PS00048|PROTAMINE_P1|PDOC00047|
SEG 222->236|rkrkggrnrakavar|
RP:PDB:NREP 1
RP:PDB:REP 98->205|3ee7B|1e-12|7.5|106/115|
RP:PFM:NREP 3
RP:PFM:REP 1->42|PF12323|1e-06|47.6|42/46|HTH_14|
RP:PFM:REP 70->280|PF01385|2e-30|35.5|203/207|Transposase_2|
RP:PFM:REP 293->357|PF07282|8e-10|47.7|65/70|Transposase_35|
HM:PFM:NREP 3
HM:PFM:REP 65->277|PF01385|2.9e-38|23.2|211/227|Transposase_2|
HM:PFM:REP 291->359|PF07282|1e-22|43.5|69/69|Transposase_35|
HM:PFM:REP 1->42|PF12323|4.2e-15|45.2|42/46|HTH_14|
RP:SCP:NREP 1
RP:SCP:REP 301->349|1wj0A|5e-07|12.2|49/58|g.72.1.1|
OP:NHOMO 973
OP:NHOMOORG 221
OP:PATTERN ------1-711413N1-1------2-11423B-1---2----------235F4-----1---1----- ----1----------------1----------2---2-76-19J------------------1---C31-3----51----------1--------------------2---------------------------C-12----4-25Z4QJ*EF11------21X3AM23-------------28-----37-22222-5B34331351-----13351-1-D3------4---------------------11-----9-H1--5512-2---------------------------------------------------23---------2-4--9---53I-4--4--11211A----2---1-1--7-----------------------------------------3-2--------------------------------111111113-----------------------------------------------B77-3B-------1-------1----1------------B1----------------------2-------------------------------------------3-2-51----------2-----2----31--------3------------2H-------------3--12221-1-32-22132113132-3111111-------D---1---1---1111121111233------------------------------1-------------64---------1J5----------------------------------------------------1-32----------1--5--1-------------------------------44-211-18-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------3----
STR:NPRED 106
STR:RPRED 28.4
SQ:SECSTR #################################################################################################cEEEEEEEEccTTTcccEEEEEEEEccccccEEEEEEEcccccEEEEcTTcccEEEEEcccEEEEEccTTcc#EEEEEEEcTTccHHHHHHHHHHHHcccc#cccccc########################################################################################################################################################################
DISOP:02AL 220-230, 371-373|
PSIPRED ccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccEEEEEEEEccEEEEEEccEEEEEEEcEEEEEEEcccccEEEEEEEEEcccEEEEEEEEEEcccccccccccEEEEEEcccEEEEEEccEEEccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccEEEEEccccccccccccccEEcccccccEEEEccccEEEEcHHHHHHHHHHHHHccEEEccccccc
//
[GTOP]
