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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56914.1
DDBJ      :             transposase
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  194/915 : Eukaryota  0/199 : Viruses  1/175   --->[See Alignment]
g.72.1
:373 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   98->205 3ee7B PDBj 1e-12 7.5 %
:RPS:SCOP  301->349 1wj0A  g.72.1.1 * 5e-07 12.2 %
:RPS:PFM   1->42 PF12323 * HTH_14 1e-06 47.6 %
:RPS:PFM   70->280 PF01385 * Transposase_2 2e-30 35.5 %
:RPS:PFM   293->357 PF07282 * Transposase_35 8e-10 47.7 %
:HMM:PFM   65->277 PF01385 * Transposase_2 2.9e-38 23.2 211/227  
:HMM:PFM   291->359 PF07282 * Transposase_35 1e-22 43.5 69/69  
:HMM:PFM   1->42 PF12323 * HTH_14 4.2e-15 45.2 42/46  
:BLT:SWISS 2->362 YDCM_ECOLI 6e-34 30.0 %
:PROS 277->287|PS00048|PROTAMINE_P1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56914.1 GT:GENE ABA56914.1 GT:PRODUCT transposase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 428172..429293 GB:FROM 428172 GB:TO 429293 GB:DIRECTION + GB:PRODUCT transposase GB:PROTEIN_ID ABA56914.1 GB:DB_XREF GI:76882233 InterPro:IPR000221 InterPro:IPR001959 InterPro:IPR010095 LENGTH 373 SQ:AASEQ MINAFKYRLYPNAHQARELETMLETHRRLYNECLAQRKERYEIAQKSVKYTQQSAWFKSERGVNEWYARLNFSSAQATMRRLDKAFQAFFRRIKAGEKPGYPRFKARGRFDSWTYPAHGDGARLLDGQLRLQHVGLVKVRQHRPVEGAVKTVQVKNEAGKWFVIASCNIGDGPAPRAEDTSVGLDVGLAYFLSTDQGEHVDNPRYQKEALRQLRIAGRAVSRKRKGGRNRAKAVARLRAIHARVANKRRDYHHKVARDLVSRYAFIAAESLTVSNMVRNRRLSRSISDAGWRQFLNILRAKAESAGSVWVEVPPQGTSQACSGCDTLVRKSLSVRQHHCPECGLRLQRDVNAARNILARGQARMEPVRLNVAQ GT:EXON 1|1-373:0| BL:SWS:NREP 1 BL:SWS:REP 2->362|YDCM_ECOLI|6e-34|30.0|353/402| PROS 277->287|PS00048|PROTAMINE_P1|PDOC00047| SEG 222->236|rkrkggrnrakavar| RP:PDB:NREP 1 RP:PDB:REP 98->205|3ee7B|1e-12|7.5|106/115| RP:PFM:NREP 3 RP:PFM:REP 1->42|PF12323|1e-06|47.6|42/46|HTH_14| RP:PFM:REP 70->280|PF01385|2e-30|35.5|203/207|Transposase_2| RP:PFM:REP 293->357|PF07282|8e-10|47.7|65/70|Transposase_35| HM:PFM:NREP 3 HM:PFM:REP 65->277|PF01385|2.9e-38|23.2|211/227|Transposase_2| HM:PFM:REP 291->359|PF07282|1e-22|43.5|69/69|Transposase_35| HM:PFM:REP 1->42|PF12323|4.2e-15|45.2|42/46|HTH_14| RP:SCP:NREP 1 RP:SCP:REP 301->349|1wj0A|5e-07|12.2|49/58|g.72.1.1| OP:NHOMO 973 OP:NHOMOORG 221 OP:PATTERN ------1-711413N1-1------2-11423B-1---2----------235F4-----1---1----- ----1----------------1----------2---2-76-19J------------------1---C31-3----51----------1--------------------2---------------------------C-12----4-25Z4QJ*EF11------21X3AM23-------------28-----37-22222-5B34331351-----13351-1-D3------4---------------------11-----9-H1--5512-2---------------------------------------------------23---------2-4--9---53I-4--4--11211A----2---1-1--7-----------------------------------------3-2--------------------------------111111113-----------------------------------------------B77-3B-------1-------1----1------------B1----------------------2-------------------------------------------3-2-51----------2-----2----31--------3------------2H-------------3--12221-1-32-22132113132-3111111-------D---1---1---1111121111233------------------------------1-------------64---------1J5----------------------------------------------------1-32----------1--5--1-------------------------------44-211-18-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------3---- STR:NPRED 106 STR:RPRED 28.4 SQ:SECSTR #################################################################################################cEEEEEEEEccTTTcccEEEEEEEEccccccEEEEEEEcccccEEEEcTTcccEEEEEcccEEEEEccTTcc#EEEEEEEcTTccHHHHHHHHHHHHcccc#cccccc######################################################################################################################################################################## DISOP:02AL 220-230, 371-373| PSIPRED ccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccEEEEEEEEccEEEEEEccEEEEEEEcEEEEEEEcccccEEEEEEEEEcccEEEEEEEEEEcccccccccccEEEEEEcccEEEEEEccEEEccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccEEEEEccccccccccccccEEcccccccEEEEccccEEEEcHHHHHHHHHHHHHccEEEccccccc //