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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56972.1
DDBJ      :             Type I site-specific deoxyribonuclease HsdR
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  323/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.34.14c.37.1
:872 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->815 2w00B PDBj e-100 39.4 %
:RPS:PDB   114->321 1bccB PDBj 1e-09 11.9 %
:RPS:PDB   508->546 2a3dA PDBj 3e-04 10.3 %
:RPS:SCOP  50->152 1si2A  b.34.14.1 * 4e-11 11.8 %
:RPS:SCOP  248->429 2fwrA2  c.37.1.19 * 2e-11 28.6 %
:HMM:SCOP  182->456 1z3iX2 c.37.1.19 * 6.7e-36 23.9 %
:RPS:PFM   91->155 PF04313 * HSDR_N 7e-07 35.4 %
:RPS:PFM   248->425 PF04851 * ResIII 2e-15 38.4 %
:RPS:PFM   774->851 PF12008 * EcoR124_C 7e-04 29.9 %
:HMM:PFM   247->425 PF04851 * ResIII 2e-40 35.4 164/184  
:HMM:PFM   3->187 PF04313 * HSDR_N 2.9e-30 28.1 167/185  
:HMM:PFM   730->850 PF12008 * EcoR124_C 1e-21 33.7 101/270  
:BLT:SWISS 13->849 HSDR_STAEQ e-132 41.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56972.1 GT:GENE ABA56972.1 GT:PRODUCT Type I site-specific deoxyribonuclease HsdR GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(482374..484992) GB:FROM 482374 GB:TO 484992 GB:DIRECTION - GB:PRODUCT Type I site-specific deoxyribonuclease HsdR GB:PROTEIN_ID ABA56972.1 GB:DB_XREF GI:76882291 InterPro:IPR004473 InterPro:IPR006935 InterPro:IPR007409 InterPro:IPR011545 LENGTH 872 SQ:AASEQ MIQKESDIEEKLIHKLQELKYTYRPDIRDKTALEQNFREKFEALNHVRLTDAEFARLRDEIVNADVFQAAKTLREYAHFQRENGTSLDYMLVNLKDWCKNDFEVINQLRINTDNSHHRYDVILLLNGLPVAQIELKTIGINPRRAMEQIVQYKNDPGNGYANTLLCFMQLFIVSNRGNTYYFANNHSQHFAFNADERFLPIYQLASEDNRKITHLDDFAEQFLAKCTLGQMISRYMVLVASEQKLMIMRPYQIYAVKAIVDCIHQNRGNGYIWHTTGSGKTLTSFKASTLLKDNPDIEKCLFVVDRKDLDRQTRQEFNKFQEGCVEENTNTETLVRRLLSEDYADKVIVTTIQKLGLALDENSKRNQQRKDRGKSTYKERLKPLGDKRMVFIFDECHRSQFGDNHKAIKAFFPKAQLFGFTGTPIFEDNANHKQIDGTIGSYRTTQDIFEKQLHAYTITHAIDDRNVLRFHIDYFKPESARTKESAHAANNGKKQPKAKPGEAITQQAVVESILDKHNAATHQRRFNALLATSSINQAIAYYKLFKAEQAAPQEQDPAFQPLNIACVFSPPADGNKDVKQLQEDLPQEKADNQQEPEKKKAALKTIMADYNAQYGGNHSISEFDLYYQDVQQRIKDQQYPNSDYPHQNKIDITIVVDMLLTGFDSKYLNTLYVDKNLKHHGLIQAFSRTNRVLNDTKPYGNILDFRSQEKAVDEAIALFSGEETSRSREIWLVDPAPKMIEKYEQAVAGIKQFMAQQGVPNHVANEEENNKVLEPKAVYNLKGDAARAEFVNRFKEVQRLKTQLDQYTDLDEAQAEKINRLLPEEALRALRGSYLETAQRLKDQQGKSGRKPAMPRKPSSSSILSLCSFPRR GT:EXON 1|1-872:0| BL:SWS:NREP 1 BL:SWS:REP 13->849|HSDR_STAEQ|e-132|41.9|738/930| SEG 547->561|aeqaapqeqdpafqp| SEG 820->831|rllpeealralr| SEG 859->868|ssssilslcs| BL:PDB:NREP 1 BL:PDB:REP 3->815|2w00B|e-100|39.4|713/839| RP:PDB:NREP 2 RP:PDB:REP 114->321|1bccB|1e-09|11.9|201/406| RP:PDB:REP 508->546|2a3dA|3e-04|10.3|39/73| RP:PFM:NREP 3 RP:PFM:REP 91->155|PF04313|7e-07|35.4|65/142|HSDR_N| RP:PFM:REP 248->425|PF04851|2e-15|38.4|159/177|ResIII| RP:PFM:REP 774->851|PF12008|7e-04|29.9|77/267|EcoR124_C| HM:PFM:NREP 3 HM:PFM:REP 247->425|PF04851|2e-40|35.4|164/184|ResIII| HM:PFM:REP 3->187|PF04313|2.9e-30|28.1|167/185|HSDR_N| HM:PFM:REP 730->850|PF12008|1e-21|33.7|101/270|EcoR124_C| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF04313|IPR007409| GO:PFM GO:0004519|"GO:endonuclease activity"|PF04313|IPR007409| GO:PFM GO:0006304|"GO:DNA modification"|PF04313|IPR007409| GO:PFM GO:0003677|"GO:DNA binding"|PF04851|IPR006935| GO:PFM GO:0005524|"GO:ATP binding"|PF04851|IPR006935| GO:PFM GO:0016787|"GO:hydrolase activity"|PF04851|IPR006935| RP:SCP:NREP 2 RP:SCP:REP 50->152|1si2A|4e-11|11.8|102/120|b.34.14.1| RP:SCP:REP 248->429|2fwrA2|2e-11|28.6|140/234|c.37.1.19| HM:SCP:REP 182->456|1z3iX2|6.7e-36|23.9|230/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 472 OP:NHOMOORG 344 OP:PATTERN ----1--------1---------1-11--1---21-2--1111-1--1-3-15--------1-----1 11----12---1-2------------------11-1-----11--2--2----111------1-------------11-1-1---1---211---------1-21-211-----------------111-2--2-2111-21-------212-------------1-23---------------2-------1------2-----------22-----11-----1-1--11--11112111111111--121---111---1--111-2-1-1--1-1-----1-11------------1111111111111-212212221-2--1-----1-1--1-11--1-----3112---11-1111111--1---211---------111--------1-1111111111------------1------1-1---1-------------1121222222---1-------------------1--1----------------2-------1-------------1--1-11--1----2----11-112-5--1-21---211--1121-1-11-12---1-12-1----12--321------1--1-1-1-2-1-11323331-11-1-33--3-2-------41-2-1-3--2-1--4----14--1-------1-13----------1-------2-----1--------1--111--1--1-1--1------1-------------2----122-------------2--1-1121---21113111-------131-1--------1-----2-------1---1111-111512---2---212111-2121--11--11-1--------2-1--1---2--211----1--23-1111-2-1------11 --------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 765 STR:RPRED 87.7 SQ:SECSTR ##ccHHHHHHHHHHHHHHTTcEEc#ccccHHHHH#HHHHHHHHHHTccccHHHHHHHHHHTTccTHHHHHHHHTccEEEEcTTccEEEEEcccccc#GGccEEEEEccc####cccccccccccccccccccccccccEEEEEEEEcccGGGccTTcTTHHHHHGGGcccccccHHHHHHHHHHHTcEEEEEEETTEEGGEEEEEEEcTHHHHHHHHHHHHHHcccccHHHHHTTTHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHccTTcccccccGGGGGGccHHHHHHHHGGEEEEEccccHHHHHHHHTTcccccccccEEEcccHHHHcTTccTTccGGGccGGGcTTTTccccccccccHHHHHHHHHHHHHHHTccHHHHHHHHGGGccEEEEETHHHHcHHHHTTcccccTTEEEEETTGGGGGGGGGGGcEEEEHHHHHHHHHHcccHHHHHHHTccccEEEEEccTTT####HHHHTcccHHHHHHTccTTTTTcHHHHHHHHHHHHHHHHcccccccTTTHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccc#####ccccccccGGGcH#####HHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHHTTc###########ccEEEEcc#TccccccTTEEEEEEEccccHHHH#HHHGGGcccccTTcccEEEEEccccHHHHHHHHHHTccccHHH###########HHccccHHHHHcEEcTTTccEEccHHHHHHHHHHccccccc###ccHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHH######################################################### DISOP:02AL 1-2| PSIPRED ccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHccEEEEEEcccEEEEEEEEEcccccccEEEEEEEEEEEccccccccEEEEEEcccEEEEEEEEcccccHHHHHHHHHHHHHHHHcccccHHHHHHHEEEEEcccEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHccEEEcccccEEcccHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHcccccEEEEcccccccccccHHHHHHHHHHccccHHHccccEEEccHHHHHHcccEEEEEEccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccEEEEEEEHHHccccccEEEEEEEEccccccHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccc //