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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA56998.1
DDBJ      :             Respiratory-chain NADH dehydrogenase, subunit 1
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  573/915 : Eukaryota  23/199 : Viruses  0/175   --->[See Alignment]
:310 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   46->278 PF00146 * NADHdh 3e-26 34.2 %
:HMM:PFM   50->294 PF00146 * NADHdh 3.1e-39 30.9 243/311  
:BLT:SWISS 26->278 NUOH_MOOTA 4e-40 35.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA56998.1 GT:GENE ABA56998.1 GT:PRODUCT Respiratory-chain NADH dehydrogenase, subunit 1 GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 510296..511228 GB:FROM 510296 GB:TO 511228 GB:DIRECTION + GB:PRODUCT Respiratory-chain NADH dehydrogenase, subunit 1 GB:PROTEIN_ID ABA56998.1 GB:DB_XREF GI:76882317 InterPro:IPR001694 LENGTH 310 SQ:AASEQ MGVMTSVLATVAALLAGVGLTAWLEPKWLGANGERGPASPVKIAADVRLTQPDPWLYYAGPVIACMGVSWAMVCIPFSPSLVGNDVNIGLFYFIVVVDFVVLGIALGGWGANTPDSVESCYRAIAQLIAYVIPLGLAIIGPIMMARSLSTVHIVEAQANAQLWYLIPQPIGFILYVISGLMQVYRAPFLEPFADPIGRGVLSVFGGWKGLLWRLALSGVLFVVAAMGAVIFLGGYSGPFLPGPVWMVIKTVGLMVLMIWLGRQVRLLSVAEMLSLSWKVLIPVGLLNVLLVGGLILLGAGQDPFSPGGGH GT:EXON 1|1-310:0| BL:SWS:NREP 1 BL:SWS:REP 26->278|NUOH_MOOTA|4e-40|35.1|251/348| TM:NTM 8 TM:REGION 1->23| TM:REGION 58->80| TM:REGION 87->108| TM:REGION 120->142| TM:REGION 164->186| TM:REGION 203->225| TM:REGION 240->262| TM:REGION 273->295| SEG 7->22|vlatvaallagvglta| SEG 279->298|vlipvgllnvllvgglillg| RP:PFM:NREP 1 RP:PFM:REP 46->278|PF00146|3e-26|34.2|231/306|NADHdh| HM:PFM:NREP 1 HM:PFM:REP 50->294|PF00146|3.1e-39|30.9|243/311|NADHdh| GO:PFM:NREP 2 GO:PFM GO:0016020|"GO:membrane"|PF00146|IPR001694| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00146|IPR001694| OP:NHOMO 674 OP:NHOMOORG 616 OP:PATTERN -----1-----------1-----111111111----------------11111---------11--11 11212---------11111-11--11111111112111111111-1--1-----------22111112221-----------22211111111---1--1-11--22211--------------11111111112111122111211111111111111111111111111111111111111111----1-1-111111111111111------111111----------11----------------------------------------------------------------------------------------------1-----------------------2--1-1111----11-------22-111111111111111112222211111111111-11111121111111112221112211111111222211111111111222-1111--11111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111121111---1---121--1-222122213222211-21-11111111111111111111-1211111---------------------1----11--311111111111111111111111111-1111111111111111111111111111111111111111111111111111-11111111111111111111111111--1----------------11111111111-1111111111111-1111111111111--------------11111111111111111-1111------------------------------------------------111 ---------------------------1---11----------1---1-------21------------------------------------1---11----1-1------1--11-----1-----------------1--11------------------------------1----------1-1--1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 308-310| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc //