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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57001.1
DDBJ      :             NADH dehydrogenase (quinone)
Swiss-Prot:             

Homologs  Archaea  54/68 : Bacteria  687/915 : Eukaryota  47/199 : Viruses  0/175   --->[See Alignment]
d.58.34
:548 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   194->394 2c1wA PDBj 4e-19 9.4 %
:RPS:SCOP  194->275 1qd1A2  d.58.34.1 * 8e-13 15.9 %
:RPS:PFM   33->88 PF00662 * Oxidored_q1_N 2e-05 35.7 %
:RPS:PFM   107->367 PF00361 * Oxidored_q1 1e-32 38.4 %
:HMM:PFM   100->367 PF00361 * Oxidored_q1 8.1e-71 37.5 264/270  
:HMM:PFM   32->89 PF00662 * Oxidored_q1_N 5.2e-13 32.8 58/62  
:BLT:SWISS 32->400 NU5C_SYNP2 7e-52 39.0 %
:PROS 387->412|PS00217|SUGAR_TRANSPORT_2
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57001.1 GT:GENE ABA57001.1 GT:PRODUCT NADH dehydrogenase (quinone) GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 512422..514068 GB:FROM 512422 GB:TO 514068 GB:DIRECTION + GB:PRODUCT NADH dehydrogenase (quinone) GB:PROTEIN_ID ABA57001.1 GB:DB_XREF GI:76882320 InterPro:IPR001750 InterPro:IPR003916 InterPro:IPR005829 LENGTH 548 SQ:AASEQ MPGRGSGLAVGGIFISALAVLPLSGADAEVALTWFTVGPFELTVSLAADRLGWWMATLVAWIALPVAVYSVPYMADEAGRQRFFAWLSFFVGMMLALVLSQSLLLLFIAWEGVGLASFVLIGQHHGQAKARQAAFKALLMTRLGDMGLLLGWLWMLMITGTTQLPPFFQQVEDGAFTAGTLNLLALLFFLAAIGKSAQLPLTAWLPEAMAAPTPVSALIHSATMAAAGVFLVLRLFPLFEHAPLALAVVLWVGAFTALIAALVATAQYDLKRLLAWSTVSQLGEMMLALGLGGPLGAAFHLTVHATFKSALFLSVGALERATGTRDLRQLGGLGKRLPWTAGAFIASALALAGFPLLSGYWSEEELLRQAVSVHTAWGVFMLVLILLAGIYIGRAAMATFGLAPQAVMPANRRESAPLVGPALGLALAAAGLGAIIKTPIESMLSFEAGSATLTGAWTLSAILASLVGLGVGAWRVYHWGPAPALGGWPSRLVVIIHGLVSGVARAAKAGALVLVWLERGFDGAARSFPTGIDRVSRQSDRRPIGTGP GT:EXON 1|1-548:0| BL:SWS:NREP 1 BL:SWS:REP 32->400|NU5C_SYNP2|7e-52|39.0|369/664| PROS 387->412|PS00217|SUGAR_TRANSPORT_2|PDOC00190| TM:NTM 14 TM:REGION 6->26| TM:REGION 28->50| TM:REGION 53->75| TM:REGION 93->115| TM:REGION 143->165| TM:REGION 174->196| TM:REGION 214->236| TM:REGION 245->267| TM:REGION 280->302| TM:REGION 339->361| TM:REGION 381->403| TM:REGION 416->438| TM:REGION 455->477| TM:REGION 494->516| SEG 95->106|lalvlsqsllll| SEG 143->157|lgdmglllgwlwmlm| SEG 174->192|gaftagtlnllallfflaa| SEG 282->298|lgemmlalglggplgaa| SEG 341->354|agafiasalalagf| SEG 416->434|aplvgpalglalaaaglga| RP:PDB:NREP 1 RP:PDB:REP 194->394|2c1wA|4e-19|9.4|191/273| RP:PFM:NREP 2 RP:PFM:REP 33->88|PF00662|2e-05|35.7|56/61|Oxidored_q1_N| RP:PFM:REP 107->367|PF00361|1e-32|38.4|258/268|Oxidored_q1| HM:PFM:NREP 2 HM:PFM:REP 100->367|PF00361|8.1e-71|37.5|264/270|Oxidored_q1| HM:PFM:REP 32->89|PF00662|5.2e-13|32.8|58/62|Oxidored_q1_N| GO:PFM:NREP 6 GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00662|IPR001516| GO:PFM GO:0042773|"GO:ATP synthesis coupled electron transport"|PF00662|IPR001516| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00662|IPR001516| GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00361|IPR001750| GO:PFM GO:0042773|"GO:ATP synthesis coupled electron transport"|PF00361|IPR001750| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00361|IPR001750| RP:SCP:NREP 1 RP:SCP:REP 194->275|1qd1A2|8e-13|15.9|69/140|d.58.34.1| OP:NHOMO 1738 OP:NHOMOORG 788 OP:PATTERN 221112111111111141-1211-44455433-----1-----1111124544-31173622122-33 2232331322211121111-12--131111112242433311132324322-122222--34111423443--------21143412211111---1--1-111-23241--------------1432424422345665523334634333333334343434336333212211112112111211--2-2122222222122222232222222122433211111111223333333333333323334----------------------------------------------------------------------14--1----------1-------121--5--142211---3221131---343222322232211445434663333333332333-22322231314123344454325531444564565544311111111322-11562222222222221122222232332333311311-22222111111211112211111111112222111221113223332222223211211111111235212323-222-343224-33312432C333327-3132111111111111111111132322111-3-12-11------32-----133-451--544311111122321223332322222-3333322332323233333222321132222222222222222222233332-322222222222112522221111161131----2----------222222211141333333326333343331111111113----33323-----22323223332222113-111111------------------------------------1211----1-251 ---------------------------111---111-----------1------121-----2-1----------------------------1---11------1------11112-----1-11-1-12--11-----1--11--------1-1---1--11-112--1-13-1----------1-7--2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 191 STR:RPRED 34.9 SQ:SECSTR #################################################################################################################################################################################################TTTEEEcc##ccccccccccccEEEEcHHHHTTTcTHHH########HHHHHHHHHHcccccccccHHHHHHHHHHHHHHTTcHHHHHHHHHHHHTTcccccHHHHHHHHHccccccccccccHHHHHTTccccccccccccHHHHHHHTTcEEEEEEccccccccccTTccEEEEEEEETTcccccEEEEccccHHHHHH########################################################################################################################################################## DISOP:02AL 1-3, 538-541, 544-548| PSIPRED ccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccc //