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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57022.1
DDBJ      :             Transposase
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  205/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
g.72.1
:450 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   160->263 3ee7B PDBj 1e-13 8.8 %
:RPS:PDB   388->416 3a43B PDBj 5e-04 26.9 %
:RPS:SCOP  364->417 1wj0A  g.72.1.1 * 4e-17 14.8 %
:RPS:PFM   69->107 PF12323 * HTH_14 2e-04 43.6 %
:RPS:PFM   137->346 PF01385 * Transposase_2 1e-27 34.3 %
:RPS:PFM   359->425 PF07282 * Transposase_35 4e-17 57.6 %
:HMM:PFM   134->343 PF01385 * Transposase_2 1.4e-40 26.0 204/227  
:HMM:PFM   358->425 PF07282 * Transposase_35 7.4e-28 51.5 66/69  
:HMM:PFM   68->108 PF12323 * HTH_14 1.6e-15 41.5 41/46  
:BLT:SWISS 67->418 YSNA_STRPR 3e-50 33.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57022.1 GT:GENE ABA57022.1 GT:PRODUCT Transposase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 537627..538979 GB:FROM 537627 GB:TO 538979 GB:DIRECTION + GB:PRODUCT Transposase GB:PROTEIN_ID ABA57022.1 GB:DB_XREF GI:76882341 InterPro:IPR001959 InterPro:IPR010095 LENGTH 450 SQ:AASEQ MYDDPLARVRSGTAHRARGSHKVMLAAGKIRGKISAARGCLQHHLATCHRPNEKSIEAMTEHDSTTVQRSYTFRFYPTSVQRQQLAMEFGHARWVWNTCLTWRGRQYRVHDKRVTGVDFSRQLTFLKGLGPYAWLKEASATCLIQKLRDQDTAFRHFFAGRAKYPRFKKRTHTQSIRYQLDQRQVAGMYRAGEFLKLPKLGALKLKWSRKPQGIPKMVTVTQDCVGRYCVSFMCEETLQPLPRKPNGIGVDLGVCDVVVTSEGWKSGNPRHLRTHTRQLRKTQRRLSRKRKSSVRWHRQRIRVAKAHARVSNTRQDWLHKLTTALIRQAGFIAMETLNVRGMMANRRLSKALGDVGMHELKRQMEYKAKWYGREFRQVDRWAPTSKTCSVCGAVQKAMPLKVREWTCPDCQTAHDRDINAARNILILATGGRPGSHARGGVYQPAAAYGC GT:EXON 1|1-450:0| BL:SWS:NREP 1 BL:SWS:REP 67->418|YSNA_STRPR|3e-50|33.3|348/402| SEG 195->206|lklpklgalklk| SEG 270->293|rhlrthtrqlrktqrrlsrkrkss| RP:PDB:NREP 2 RP:PDB:REP 160->263|3ee7B|1e-13|8.8|102/115| RP:PDB:REP 388->416|3a43B|5e-04|26.9|26/117| RP:PFM:NREP 3 RP:PFM:REP 69->107|PF12323|2e-04|43.6|39/46|HTH_14| RP:PFM:REP 137->346|PF01385|1e-27|34.3|204/207|Transposase_2| RP:PFM:REP 359->425|PF07282|4e-17|57.6|66/70|Transposase_35| HM:PFM:NREP 3 HM:PFM:REP 134->343|PF01385|1.4e-40|26.0|204/227|Transposase_2| HM:PFM:REP 358->425|PF07282|7.4e-28|51.5|66/69|Transposase_35| HM:PFM:REP 68->108|PF12323|1.6e-15|41.5|41/46|HTH_14| RP:SCP:NREP 1 RP:SCP:REP 364->417|1wj0A|4e-17|14.8|54/58|g.72.1.1| OP:NHOMO 973 OP:NHOMOORG 229 OP:PATTERN ------1-7114--C--1------2--1323B-1---2----------115F3-1---1---11---- ----1------------33-31----33333-----2-76-16J------------------1---B2113----51----------1--------------------2---------------------------C-12----4-11P4LH*DB11------21X1AK25-------------28-----1A-33333-5C35431351-----23451-1-D3------4----------------1-----6-2--19-H2--5513-2---------------------------------------------------23---------2-4--922-53L34--4--11211A----2-----1--6-----------------------------------------1-2--------------------------------111111112-----------------------------------------------B88-3B---------------1----1------------B1----------------------1-------------------------------------------3-2-51----------2-----2----31--------3------------2H-------------3--12221-1-32-22142113132-3111111-------D---1---1---1111121111223------------------------------1-------------64---------1J5----------------------------------------------------1-32----------1--5--1-------------------------------54-211-1E-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 128 STR:RPRED 28.4 SQ:SECSTR ###############################################################################################################################################################ccEEEEEEEEcc##TTTcccEEEEEEEEccccccEEEEEEEccccccEEEEcTTcccEEEEEccccEEEEEccTTccEEEEEEEcTTccHHHHHHHHHHHHccc############################################################################################################################ETTTc###cEEccccccccccccccccEE################################## DISOP:02AL 1-4, 288-295, 431-443, 445-446, 449-450| PSIPRED ccccHHHHHHccccHHcccccEEEEEEccHHHHHHHHHHHHHHHHEEEEcccccccHHHHHccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccEEEEEEEEEcEEEEEccccEEEEEEEcccccEEEEEEEEEEcccEEEEEEEEEEccccccccccEEEEEEcccEEEEEEcccEEccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccEEEEEcccccccccccccccccccccccccEEEEccccEEEccHHHHHHHHHHHHcccccccccccccccccccccc //