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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57057.1
DDBJ      :             Sigma-54 specific transcriptional regulator, Fis-type
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  617/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.37.1c.92.2
:323 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->317 1ojlD PDBj 1e-62 44.9 %
:RPS:PDB   2->250 1e32A PDBj 4e-45 14.3 %
:RPS:PDB   286->321 3e7lC PDBj 1e-06 13.9 %
:RPS:SCOP  7->313 1fp4B  c.92.2.3 * 5e-41 8.4 %
:HMM:SCOP  6->253 1ny5A2 c.37.1.20 * 7.1e-72 41.7 %
:HMM:SCOP  221->321 1etoB_ a.4.1.12 * 2.6e-21 40.8 %
:RPS:PFM   7->173 PF00158 * Sigma54_activat 3e-45 52.1 %
:RPS:PFM   278->318 PF02954 * HTH_8 4e-08 58.5 %
:HMM:PFM   7->173 PF00158 * Sigma54_activat 4.9e-68 54.5 167/168  
:HMM:PFM   278->318 PF02954 * HTH_8 2.8e-18 61.0 41/42  
:BLT:SWISS 6->318 ANFA_AZOVI 4e-65 43.3 %
:PROS 93->108|PS00676|SIGMA54_INTERACT_2
:PROS 221->230|PS00688|SIGMA54_INTERACT_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57057.1 GT:GENE ABA57057.1 GT:PRODUCT Sigma-54 specific transcriptional regulator, Fis-type GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(575344..576315) GB:FROM 575344 GB:TO 576315 GB:DIRECTION - GB:PRODUCT Sigma-54 specific transcriptional regulator, Fis-type GB:PROTEIN_ID ABA57057.1 GB:DB_XREF GI:76882376 InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593 LENGTH 323 SQ:AASEQ MDGFDSLIGKAPAFEALLRSARMVAATEVTALIIGETGTGKELLAQAIHAESQRANKAFAAINCAALPEGLAESELFGHRRGAFSGAVHDHLGRFRAAEGGTVFLDEVNELSPAVQAKLLRFLESGECQAIGDTRVQHCDVRVIAATNCNLNQRIQEGRFRQDLYYRLHVVPLEIPPLRAREGDIHKLLKHFCAVFAQQHHGLTPAGFNAAALRALNLYSWPGNVRELRNFCERMMVLLPGQIITPQNLPFNIRGDLNLPPEKGEKPLITLPESGLELDRVEMELIHQAIAKTKGNRAKAARLLGISRDTLCYRLQKYTLQTN GT:EXON 1|1-323:0| BL:SWS:NREP 1 BL:SWS:REP 6->318|ANFA_AZOVI|4e-65|43.3|305/533| PROS 93->108|PS00676|SIGMA54_INTERACT_2|PDOC00579| PROS 221->230|PS00688|SIGMA54_INTERACT_3|PDOC00579| SEG 55->66|ankafaaincaa| BL:PDB:NREP 1 BL:PDB:REP 7->317|1ojlD|1e-62|44.9|296/297| RP:PDB:NREP 2 RP:PDB:REP 2->250|1e32A|4e-45|14.3|237/438| RP:PDB:REP 286->321|3e7lC|1e-06|13.9|36/60| RP:PFM:NREP 2 RP:PFM:REP 7->173|PF00158|3e-45|52.1|167/168|Sigma54_activat| RP:PFM:REP 278->318|PF02954|4e-08|58.5|41/42|HTH_8| HM:PFM:NREP 2 HM:PFM:REP 7->173|PF00158|4.9e-68|54.5|167/168|Sigma54_activat| HM:PFM:REP 278->318|PF02954|2.8e-18|61.0|41/42|HTH_8| GO:PFM:NREP 6 GO:PFM GO:0005524|"GO:ATP binding"|PF00158|IPR002078| GO:PFM GO:0005622|"GO:intracellular"|PF00158|IPR002078| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00158|IPR002078| GO:PFM GO:0008134|"GO:transcription factor binding"|PF00158|IPR002078| GO:PFM GO:0003700|"GO:transcription factor activity"|PF02954|IPR002197| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02954|IPR002197| RP:SCP:NREP 1 RP:SCP:REP 7->313|1fp4B|5e-41|8.4|296/522|c.92.2.3| HM:SCP:REP 6->253|1ny5A2|7.1e-72|41.7|247/247|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 221->321|1etoB_|2.6e-21|40.8|98/98|a.4.1.12|1/1|Homeodomain-like| OP:NHOMO 5705 OP:NHOMOORG 624 OP:PATTERN -------------------------------------------------------------------- 7LN---------------------------------1-------------------------------------------1--63965999A27331--336356I5C651111111111111113337435775411-1----2--1-------11-------1--------------------------5147777777858767778955658882691611323333O1--------------------5----1-----11------2---------------------------------------------------HI3GDCCEDCE7D7-N44511216---9--4-aX8HD92DA497A-12-CDG444422222B8CAB444AC66933233332335-A89898974841866567766687BF54365BB9BC35722222222A332277E11111111--111111111111111----15888546538LLMKMKFCCCCJJKOFGEE9CKMLHMJG-1DFDGH877EFBCC887DAD898711-----343HLJCerLMOfVEeNbbe6adbcUUgLPcefhr*KV-111-111111111111111121--DCEBAABAKABA6ECBBBDGFHFEFFBFFEII--2BGAJ------D79B966DBBDDCDEDD-BECCFDDDCCBBEDDCDDCCDC99766CBBBACDDCDCAEABC9986A9A94-655676655787---3-----3333A3N9L1111111111111113344326121Q9MNMNLOMMMMPMKENLJ---------68CDGEEEFEEIFGF67A88886672222--F13333331111111142--------------------------13111-1---7A2 -1------------------------------------------------------------------------------------------------------------------------------------------------------------4-----------3--2-----------1--4-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 322 STR:RPRED 99.7 SQ:SECSTR THHHHHHHHHHHHHHcHHHHHHcccccccEEEEEccTTccHHHHHHHHHHHTTcEEEEEcHHHHccHHTTccTTHHHHHHHHHHHHHHHHHHHHHHHTccEEEEEccGGGTccHHHHcccTTHHHHHHHHHHHHHTccccccEEEEEEEccGGGccGGGTcTTcccEEEEcccccHHHHHHHHHHTTTTccccTTccHHHHHHHcTTccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccTTcEEccGGGccGGGcccccccHccccEEEccHHHHTTcccccccccccEEEEccHHHHHHHHHHHHHHH# DISOP:02AL 254-273, 321-323| PSIPRED cccHHHHHcccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHccccccccccccccccccEEEccccEEEEccHHcccHHHHHHHHHHHHccEEEEEcccEEEEEEEEEEEcccccHHHHHHcccccHHHHHHHcEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEcHHHccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHccccc //