[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57116.1
DDBJ      :             Sel1-like repeat protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  78/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.118.18
:219 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   78->173 3e4bC PDBj 6e-18 28.4 %
:RPS:SCOP  87->173 1klxA  a.118.18.1 * 1e-07 23.3 %
:HMM:SCOP  72->214 1ouvA_ a.118.18.1 * 1.2e-14 24.6 %
:RPS:PFM   95->128 PF08238 * Sel1 3e-05 50.0 %
:HMM:PFM   94->129 PF08238 * Sel1 8.2e-11 44.4 36/39  
:HMM:PFM   131->166 PF08238 * Sel1 4.4e-09 41.7 36/39  
:BLT:SWISS 93->170 PODJ_CAUCR 4e-13 42.9 %
:TM
:REPEAT 2|100->133|136->170
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57116.1 GT:GENE ABA57116.1 GT:PRODUCT Sel1-like repeat protein GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 643104..643763 GB:FROM 643104 GB:TO 643763 GB:DIRECTION + GB:PRODUCT Sel1-like repeat protein GB:PROTEIN_ID ABA57116.1 GB:DB_XREF GI:76882435 InterPro:IPR006597 LENGTH 219 SQ:AASEQ MTYHSLSTWNLAVPEMEKISIRKLGMRLLCGLIFCAMLIACTQAPPAAMIRVCDSKGCSYRPSDSATYDPSATVPDEDPEGRIAALEALAQQDPQAAYDLGLRFFRGDGVPQDSYRALQWMRSAAERGNLDAQVALGQLYLTGLEELGPDPREAEKWLTIAAGRGNEEAQTLLAEAREARQAEDAYFKWRNRWRPLFYRRWYYNYPYRFYWRRGGWHHY GT:EXON 1|1-219:0| BL:SWS:NREP 1 BL:SWS:REP 93->170|PODJ_CAUCR|4e-13|42.9|77/974| TM:NTM 1 TM:REGION 24->46| NREPEAT 1 REPEAT 2|100->133|136->170| SEG 174->185|aearearqaeda| RP:PDB:NREP 1 RP:PDB:REP 78->173|3e4bC|6e-18|28.4|95/405| RP:PFM:NREP 1 RP:PFM:REP 95->128|PF08238|3e-05|50.0|34/36|Sel1| HM:PFM:NREP 2 HM:PFM:REP 94->129|PF08238|8.2e-11|44.4|36/39|Sel1| HM:PFM:REP 131->166|PF08238|4.4e-09|41.7|36/39|Sel1| RP:SCP:NREP 1 RP:SCP:REP 87->173|1klxA|1e-07|23.3|86/133|a.118.18.1| HM:SCP:REP 72->214|1ouvA_|1.2e-14|24.6|142/0|a.118.18.1|1/1|HCP-like| OP:NHOMO 119 OP:NHOMOORG 81 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------1-----------8---2-----------------------12-2--11-1---------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------11------------3-3-1-------------------11--------1---------------------11----1-----2-----1-1---------------------------11---------------------------------------3-----1222211--------11---11--------1-------1-------1-1-1---------211------11----------13----41--------1---------------------------------1---------1----------------2-------------------1-------------------------1----------1-1-11--11-1-1-------------------------------3233------------3-111-----1---1--------------------------------------------------------------2-----------------------------------------------------1-- -----------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------1-1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 96 STR:RPRED 43.8 SQ:SECSTR #############################################################################cHHHHHHHHHTTTTTcHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHTTcTTTTHHHHHHHHTcTTTccccHHHHHHHHHHHGGGccHHHHHHH############################################## DISOP:02AL 218-220| PSIPRED ccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccc //