[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57155.1
DDBJ      :             Exonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  122/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:205 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->111 2p1jB PDBj 7e-10 29.8 %
:RPS:PDB   9->189 3cg7A PDBj 2e-18 15.3 %
:RPS:SCOP  16->189 1j53A  c.55.3.5 * 7e-19 27.5 %
:HMM:SCOP  7->192 1y97A1 c.55.3.5 * 3.7e-30 29.6 %
:RPS:PFM   17->182 PF00929 * Exonuc_X-T 1e-12 34.6 %
:HMM:PFM   16->183 PF00929 * Exonuc_X-T 5.8e-18 30.8 156/165  
:BLT:SWISS 13->185 DPO3E_PASMU 4e-11 30.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57155.1 GT:GENE ABA57155.1 GT:PRODUCT Exonuclease GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 682483..683100 GB:FROM 682483 GB:TO 683100 GB:DIRECTION + GB:PRODUCT Exonuclease GB:PROTEIN_ID ABA57155.1 GB:DB_XREF GI:76882474 InterPro:IPR006055 LENGTH 205 SQ:AASEQ MYKELLWIFTQLPDDYIVLDTETTGLPDENGLPDIVTLGITVVSNREIAESVEFKTRPQKRISEEAQSIHGITNKQAAAFDSFDSQWQQISEYLKHQLIVIHNASFDWPILLDHVLRHGLAMPEIQGVFCSQKAAIPWAQAMDLPCSHRGPSLDTLTKALGVEDLRVKEDGLHGAKIDSRQLAQVVQVISRNENMEWVLIVNHRG GT:EXON 1|1-205:0| BL:SWS:NREP 1 BL:SWS:REP 13->185|DPO3E_PASMU|4e-11|30.3|165/253| BL:PDB:NREP 1 BL:PDB:REP 16->111|2p1jB|7e-10|29.8|94/171| RP:PDB:NREP 1 RP:PDB:REP 9->189|3cg7A|2e-18|15.3|177/296| RP:PFM:NREP 1 RP:PFM:REP 17->182|PF00929|1e-12|34.6|159/163|Exonuc_X-T| HM:PFM:NREP 1 HM:PFM:REP 16->183|PF00929|5.8e-18|30.8|156/165|Exonuc_X-T| RP:SCP:NREP 1 RP:SCP:REP 16->189|1j53A|7e-19|27.5|167/174|c.55.3.5| HM:SCP:REP 7->192|1y97A1|3.7e-30|29.6|179/0|c.55.3.5|1/1|Ribonuclease H-like| OP:NHOMO 126 OP:NHOMOORG 124 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------1---1111111---1-111------1-1------------------------------------1-------1---------1-------------------------------------------------------------11--------------------------------------------------------------------------11-11-------------------1-----------1-----------------1--------11------------------------1------121111----111-------11111-1-111111111-1111111----11111111-1--11-1-------------------------------------------------------------111--111-1------1------11-11---2111--------------------------------------------------------------------------------------------111111----11111111-1-11---1--1------------11111---1-----111------------------------11------------1-1----------------------------------1--------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 197 STR:RPRED 96.1 SQ:SECSTR ########cccccccEEEEEEEEcccTcccccccEEEEEEEEEETTEEEEEEEEcccccccccHHHHHHHcccHHHHHTcccHHHHHHHHHHHHHHHcEEEEcccHHHHTHHHHHHHHTTccccGGGcEEEHHHHHHHHHHHcccccccccHHHHHHHHTTccccccccccTTcHHHHHHHHHHHHHHHHTTccccccEEEEcTT DISOP:02AL 201-205| PSIPRED ccHHHHHHHHcccccEEEEEEEEccccccccccEEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHHHcccHHHHHccccHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccc //