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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57191.1
DDBJ      :             transposase, IS4 family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  48/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.3.1
:442 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  282->421 2ebfX3  d.3.1.17 * 1e-07 6.8 %
:RPS:PFM   53->121 PF05598 * DUF772 6e-05 36.4 %
:RPS:PFM   104->165 PF06021 * Gly_acyl_tr_N 4e-05 36.1 %
:RPS:PFM   288->376 PF01609 * Transposase_11 8e-06 32.9 %
:HMM:PFM   53->125 PF05598 * DUF772 1e-21 32.4 71/77  
:HMM:PFM   279->398 PF01609 * Transposase_11 1.3e-07 20.2 114/207  
:HMM:PFM   206->264 PF03148 * Tektin 0.00052 16.9 59/384  
:HMM:PFM   104->167 PF06021 * Gly_acyl_tr_N 0.00089 29.7 64/205  
:BLT:SWISS 15->188 YNF8_RHIME 3e-54 54.6 %
:BLT:SWISS 264->370 Y4RI_RHISN 3e-04 30.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57191.1 GT:GENE ABA57191.1 GT:PRODUCT transposase, IS4 family GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(728217..729545) GB:FROM 728217 GB:TO 729545 GB:DIRECTION - GB:PRODUCT transposase, IS4 family GB:PROTEIN_ID ABA57191.1 GB:DB_XREF GI:76882510 InterPro:IPR002559 LENGTH 442 SQ:AASEQ MKPQTPPDLPTDDLFRHRLENLIDTRHELAKLAALIDWEFFDAQWGEAFCENGRPAIATRLIAGLHYLKHTYGLSDEQVVQRWAENPYWQYFCGERYFQHELPLNPSSLTRWRQRLGDEGMESLLSATIDAAIASKAVKARDLKCVTVDTTVQEKAIAFPTDSKLYNRARERLVRLAKAHGVPLRQSYVRVGPRLLFKNNRYGYARQTRRMRRTAAKLKTVLGRVVRDIERKLPKQSASVQAAFAESMALTKRLLDQQRHDKNKLYALHAPEVECIAKGTAHKRYEFGVKVSIATTNRSNLVVGAQSLPGSPYDGHTLKKALHQVERLTGQRPERCYVDLGYRGHDVDDVDVFKARQKRGVTRTIRRELKRRNAIEPIIGHMKNDGLLHRNYLKGVEGDAINAILCGAGQNLRLILRYLRIFWLKIQPAFIQYLLLAPPRAA GT:EXON 1|1-442:0| BL:SWS:NREP 2 BL:SWS:REP 15->188|YNF8_RHIME|3e-54|54.6|174/207| BL:SWS:REP 264->370|Y4RI_RHISN|3e-04|30.4|102/100| SEG 5->14|tppdlptddl| SEG 201->216|rygyarqtrrmrrtaa| RP:PFM:NREP 3 RP:PFM:REP 53->121|PF05598|6e-05|36.4|66/76|DUF772| RP:PFM:REP 104->165|PF06021|4e-05|36.1|61/199|Gly_acyl_tr_N| RP:PFM:REP 288->376|PF01609|8e-06|32.9|82/192|Transposase_11| HM:PFM:NREP 4 HM:PFM:REP 53->125|PF05598|1e-21|32.4|71/77|DUF772| HM:PFM:REP 279->398|PF01609|1.3e-07|20.2|114/207|Transposase_11| HM:PFM:REP 206->264|PF03148|0.00052|16.9|59/384|Tektin| HM:PFM:REP 104->167|PF06021|0.00089|29.7|64/205|Gly_acyl_tr_N| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01609|IPR002559| GO:PFM GO:0004803|"GO:transposase activity"|PF01609|IPR002559| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF01609|IPR002559| RP:SCP:NREP 1 RP:SCP:REP 282->421|2ebfX3|1e-07|6.8|132/192|d.3.1.17| OP:NHOMO 397 OP:NHOMOORG 48 OP:PATTERN -------------------------------------------------------------------- 1---------------------------------------------------------------------------------------------1-----------------------------------7---------------91--111--------------------------------------------------------------------------------------------------------B7---------N1------------------------------------------------------1------------------------------5----A1---1---------------------C-21---1--3------------------------------2---3----------6-------------5-------------------------------------------------------------1--------1--------6------5---5-----------------------1-----1----------1-----------2-------------------------2------1----------------------------1-------------------------------------------------------------------------------------------------------------2----------------------------------------------------------------------1G3I4***------1-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-12, 233-235, 257-263, 352-367, 441-442| PSIPRED ccccccccccccccccccHHHHcccccHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHcccccccEEEcccEEEEEEEccEEEEEcccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccHHccccccccccHHHHHHHHHHHcccHHHHHHHHccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc //