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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57205.1
DDBJ      :             Phage integrase
Swiss-Prot:             

Homologs  Archaea  35/68 : Bacteria  811/915 : Eukaryota  0/199 : Viruses  2/175   --->[See Alignment]
a.60.9d.163.1
:310 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->155 2chnB PDBj 9e-04 26.9 %
:BLT:PDB   154->303 1a0pA PDBj 1e-19 44.0 %
:RPS:PDB   8->303 2crxB PDBj 8e-30 13.5 %
:RPS:SCOP  10->115 1crxA1  a.60.9.1 * 4e-14 15.2 %
:RPS:SCOP  158->304 1aihA  d.163.1.1 * 1e-24 24.6 %
:HMM:SCOP  7->105 1a0pA1 a.60.9.1 * 6.6e-14 27.6 %
:HMM:SCOP  129->312 4crxA2 d.163.1.1 * 5.1e-43 37.5 %
:RPS:PFM   15->93 PF02899 * Phage_integr_N 1e-08 38.5 %
:RPS:PFM   154->300 PF00589 * Phage_integrase 3e-30 44.5 %
:HMM:PFM   151->301 PF00589 * Phage_integrase 1.5e-40 42.0 150/173  
:HMM:PFM   14->93 PF02899 * Phage_integr_N 2.4e-15 32.9 79/84  
:BLT:SWISS 19->308 XERD_BACHD 1e-36 35.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57205.1 GT:GENE ABA57205.1 GT:PRODUCT Phage integrase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 743776..744708 GB:FROM 743776 GB:TO 744708 GB:DIRECTION + GB:PRODUCT Phage integrase GB:PROTEIN_ID ABA57205.1 GB:DB_XREF GI:76882524 InterPro:IPR002104 InterPro:IPR004107 LENGTH 310 SQ:AASEQ MEKKTADFWQARKDFLAHLHYAKGYSQGTCYAYHSDLGIWGRWLEEASKDWRQATHLDTEQFVAWQMRKRGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQRAFQEAVQRVEDLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDVRMVNGVAKSVRIIGKGNRERLVPLPEAFGQVLGAWLQGRGGEDFVFAKAPGEKPPGPHAVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGIVAKL GT:EXON 1|1-310:0| BL:SWS:NREP 1 BL:SWS:REP 19->308|XERD_BACHD|1e-36|35.9|270/299| BL:PDB:NREP 2 BL:PDB:REP 7->155|2chnB|9e-04|26.9|134/623| BL:PDB:REP 154->303|1a0pA|1e-19|44.0|141/271| RP:PDB:NREP 1 RP:PDB:REP 8->303|2crxB|8e-30|13.5|288/309| RP:PFM:NREP 2 RP:PFM:REP 15->93|PF02899|1e-08|38.5|78/84|Phage_integr_N| RP:PFM:REP 154->300|PF00589|3e-30|44.5|146/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 151->301|PF00589|1.5e-40|42.0|150/173|Phage_integrase| HM:PFM:REP 14->93|PF02899|2.4e-15|32.9|79/84|Phage_integr_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 10->115|1crxA1|4e-14|15.2|105/110|a.60.9.1| RP:SCP:REP 158->304|1aihA|1e-24|24.6|126/170|d.163.1.1| HM:SCP:REP 7->105|1a0pA1|6.6e-14|27.6|98/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 129->312|4crxA2|5.1e-43|37.5|184/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 2197 OP:NHOMOORG 848 OP:PATTERN 111-11-11111111-2---------------111----4221-1111------1111111112---- 23A2423222222323322-242232222222A3363423126322222222424252222362243---2333332332221--111435323232--52935332232222222222222222232323222321221123642114--1-1----1----2--1211-------------1211122333245556234235533322332222386982432222324234724222224442223622322222213232233222522221-----1111-111--1211111111111111111111111--2111573345323523442313322112321321756436824152222353-232D922222222223223222323233333333333-322233233D23222422EC2255222229222222322333333337222232222222222222222112222222222222-222322111623323242222225C22222223422A5221445333322633222633322-2222222434D332223-225244342222333344323323323131111111111112111123121265252462123323369342323342824224--24333------23442332222232422-222242222223322222243272AD32222252222232225222222222-222222222222--12---------222223222222222122223233422222232252222222222243522222222223347333433335522233333332222--32442222--------322---------1---------------1111112111262 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------1----------------------------------------------------1-------------------------------------- STR:NPRED 304 STR:RPRED 98.1 SQ:SECSTR ######ccHHHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTccccGGGcHHHHHHHHHHHHHHHHTTccccccccccHHHHHHcHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHcccHHHHHHccGGGEEEcTTccEEEEEcccEEEEccHHHHHHHHHHHEcTTccEEccccccccHHHEHHHHHHHHHHHHHccccTTcccccccTTHHHHHHHHHHHHTTccHHHHHHHHTcccHHHHHHTcccHHHHHcHHHHHH DISOP:02AL 1-4| PSIPRED cccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccEEEEEEEEccccEEEEEEccHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHcc //