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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57316.1
DDBJ      :             NusB antitermination factor
Swiss-Prot:NUSB_NITOC   RecName: Full=N utilization substance protein B homolog;         Short=Protein nusB;

Homologs  Archaea  0/68 : Bacteria  589/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.79.1
:148 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->133 1baq- PDBj 6e-32 47.3 %
:RPS:PDB   5->133 3d3cA PDBj 4e-40 47.3 %
:RPS:SCOP  5->136 1tztA  a.79.1.1 * 1e-33 29.5 %
:HMM:SCOP  4->128 1eyvA_ a.79.1.1 * 1.3e-38 44.0 %
:RPS:PFM   8->129 PF01029 * NusB 9e-16 40.8 %
:HMM:PFM   6->129 PF01029 * NusB 3.9e-36 41.8 122/134  
:BLT:SWISS 1->148 NUSB_NITOC 2e-83 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57316.1 GT:GENE ABA57316.1 GT:PRODUCT NusB antitermination factor GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 875762..876208 GB:FROM 875762 GB:TO 876208 GB:DIRECTION + GB:PRODUCT NusB antitermination factor GB:PROTEIN_ID ABA57316.1 GB:DB_XREF GI:76882635 InterPro:IPR006027 InterPro:IPR011605 LENGTH 148 SQ:AASEQ MSNRRSKARTAALQGLYQWQLMGQDVDKIDIEFIVQDIRGIDHAYFQELLRGVPQRQGELDECLGPFLDRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGHRYVNGILDKVAQKVRATEFRSRALRRRLQT GT:EXON 1|1-148:0| SW:ID NUSB_NITOC SW:DE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB; SW:GN Name=nusB; OrderedLocusNames=Noc_0803; SW:KW Complete proteome; Transcription; Transcription regulation;Transcription termination. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->148|NUSB_NITOC|2e-83|100.0|148/148| GO:SWS:NREP 3 GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| GO:SWS GO:0006353|"GO:transcription termination"|Transcription termination| BL:PDB:NREP 1 BL:PDB:REP 5->133|1baq-|6e-32|47.3|129/139| RP:PDB:NREP 1 RP:PDB:REP 5->133|3d3cA|4e-40|47.3|129/138| RP:PFM:NREP 1 RP:PFM:REP 8->129|PF01029|9e-16|40.8|120/124|NusB| HM:PFM:NREP 1 HM:PFM:REP 6->129|PF01029|3.9e-36|41.8|122/134|NusB| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF01029|IPR006027| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01029|IPR006027| RP:SCP:NREP 1 RP:SCP:REP 5->136|1tztA|1e-33|29.5|132/141|a.79.1.1| HM:SCP:REP 4->128|1eyvA_|1.3e-38|44.0|125/131|a.79.1.1|1/1|NusB-like| OP:NHOMO 597 OP:NHOMOORG 589 OP:PATTERN -------------------------------------------------------------------- -1--1------1-----------------------------2--1-1-111----1-1----1-111211---------111-------------------------------------------1-11-11112-1111-111111-1-111--------------1----------------------1111111111111111111111111111111111111111111111111111111111111111----------1111--1---1-----------1----------------------------1---111-1---1-------1-12-111111-12--2---111111--111--11----1-111111111111111111111111111111111-11111111111111111111111111--1---1111--------------11111------------------------1-----111-1111111111111111111111-1111111111111111111111111111111111111111111111111-111-111111111111111111211111111111-1111111111111111-1111111111111111111111111111111111111-1111111111111111111111111-11-1111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111----1-11111--------------------------11-111111--1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 132 STR:RPRED 89.2 SQ:SECSTR ####HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccTTccHHHHHHHHHHHHTcHHHHHHHHGGGTTTccccccHHHHHHHHHHHHHHHHcTTccHHHHHHHHHHHHHHHccTTHHHHHHHHHHHHHHHHcccc############ DISOP:02AL 1-4, 145-148| PSIPRED cccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //