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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57329.1
DDBJ      :             Outer membrane protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  584/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.102.3a.250.1
:766 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->356 3efcA PDBj 5e-67 40.2 %
:RPS:PDB   31->356 3efcA PDBj 2e-52 40.2 %
:RPS:SCOP  29->333 2j0oA1  a.250.1.1 * 2e-27 8.2 %
:RPS:SCOP  395->660 1hv6A  a.102.3.1 * 5e-20 9.8 %
:RPS:PFM   219->270 PF07244 * Surf_Ag_VNR 5e-07 44.2 %
:RPS:PFM   274->351 PF07244 * Surf_Ag_VNR 9e-06 30.8 %
:RPS:PFM   354->427 PF07244 * Surf_Ag_VNR 6e-10 54.5 %
:RPS:PFM   455->763 PF01103 * Bac_surface_Ag 7e-46 35.2 %
:HMM:PFM   455->766 PF01103 * Bac_surface_Ag 1.6e-76 31.9 310/323  
:HMM:PFM   32->97 PF07244 * Surf_Ag_VNR 3.7e-10 31.8 66/78  
:HMM:PFM   99->179 PF07244 * Surf_Ag_VNR 6.2e-13 28.6 77/78  
:HMM:PFM   183->270 PF07244 * Surf_Ag_VNR 1.1e-18 38.2 76/78  
:HMM:PFM   273->351 PF07244 * Surf_Ag_VNR 6.6e-14 29.9 77/78  
:HMM:PFM   354->428 PF07244 * Surf_Ag_VNR 1.4e-20 41.7 72/78  
:BLT:SWISS 31->766 YAET_SERP5 e-141 38.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57329.1 GT:GENE ABA57329.1 GT:PRODUCT Outer membrane protein GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 888949..891249 GB:FROM 888949 GB:TO 891249 GB:DIRECTION + GB:PRODUCT Outer membrane protein GB:PROTEIN_ID ABA57329.1 GB:DB_XREF GI:76882648 InterPro:IPR000184 InterPro:IPR010827 LENGTH 766 SQ:AASEQ MSLKFVKKPIAVAIVALILIGQVLAAEFQEFIVKDIRVEGLQRISAGTVFNYLPVKVGDTIDSQRVKDTIRGLFRTRFFKDVRVEREGNVLVVVVVERPTITSIQFVGNKELKGDQLSQALKQVGFAEGRVFDRALLEKVELELQRQYFSRGKYGVKIDTTVTPLARNQVGVTVNIKEGAIAKIGGINIIGNHAFSEDELLGAFQLSTSNWLSFFTHDDQYSRQKLAADLEALRSYYLDRGYINFNIDSTQVSITPDKKRVFITVNVTEGDRYQIGEVKLAGDLVLPHEKLFDALTVASGKVFSRKAIAESTTHITDLLGNKGYAFANVNAVPEINEEEKKVNLTFFVDPGKRAYVRRVNISGNTKTRDEVLRREIRQQEGGWVATELINRSRLRIQRLGYFEDVNVETVPVPGTTDQVDVNFSVVERPSGSLSAGLGFSQSQGFIFNASITQRNFLGSGKHVSFAFNNSQVNTIYSFGYTNPYYTIDGISRGFNLFYRETSPFRANIARFSTDAYGGDMHFGIPVTENDRVRLGFGYQHTKVNLTENSPQEYHKFVDSEGNKFDTFNTNLGWSRDSRNNALLTTDGSIQSLFGEITLPLGSLQFFKFGYRHRWFHPLSKSLTLMLNGDVAYGNAYGNTEEFPFFENFFAGGIHSVRGFKANTLGPKASDGTTLGGNFKMTGTIEVFFPVPFAEELKSVRLGTFIDAGNVYGIDQDISLQGLRYSAGISANWLSPFGSLQFSFAKAFNVQPNDRPEVFQFSLGTSF GT:EXON 1|1-766:0| BL:SWS:NREP 1 BL:SWS:REP 31->766|YAET_SERP5|e-141|38.4|734/801| TM:NTM 1 TM:REGION 9->31| SEG 10->26|iavaivaliligqvlaa| SEG 82->98|vrveregnvlvvvvver| SEG 175->192|nikegaiakigginiign| SEG 640->649|eefpffenff| BL:PDB:NREP 1 BL:PDB:REP 31->356|3efcA|5e-67|40.2|326/327| RP:PDB:NREP 1 RP:PDB:REP 31->356|3efcA|2e-52|40.2|326/327| RP:PFM:NREP 4 RP:PFM:REP 219->270|PF07244|5e-07|44.2|49/77|Surf_Ag_VNR| RP:PFM:REP 274->351|PF07244|9e-06|30.8|76/77|Surf_Ag_VNR| RP:PFM:REP 354->427|PF07244|6e-10|54.5|66/77|Surf_Ag_VNR| RP:PFM:REP 455->763|PF01103|7e-46|35.2|304/317|Bac_surface_Ag| HM:PFM:NREP 6 HM:PFM:REP 455->766|PF01103|1.6e-76|31.9|310/323|Bac_surface_Ag| HM:PFM:REP 32->97|PF07244|3.7e-10|31.8|66/78|Surf_Ag_VNR| HM:PFM:REP 99->179|PF07244|6.2e-13|28.6|77/78|Surf_Ag_VNR| HM:PFM:REP 183->270|PF07244|1.1e-18|38.2|76/78|Surf_Ag_VNR| HM:PFM:REP 273->351|PF07244|6.6e-14|29.9|77/78|Surf_Ag_VNR| HM:PFM:REP 354->428|PF07244|1.4e-20|41.7|72/78|Surf_Ag_VNR| GO:PFM:NREP 4 GO:PFM GO:0019867|"GO:outer membrane"|PF07244|IPR010827| GO:PFM GO:0019867|"GO:outer membrane"|PF07244|IPR010827| GO:PFM GO:0019867|"GO:outer membrane"|PF07244|IPR010827| GO:PFM GO:0019867|"GO:outer membrane"|PF01103|IPR000184| RP:SCP:NREP 2 RP:SCP:REP 29->333|2j0oA1|2e-27|8.2|267/284|a.250.1.1| RP:SCP:REP 395->660|1hv6A|5e-20|9.8|266/351|a.102.3.1| OP:NHOMO 679 OP:NHOMOORG 588 OP:PATTERN -------------------------------------------------------------------- 132--------------------------------------------------------------------------------111221111111111-1111111112111111111111111111122121121----------11-11111111-1---11111-1111---111----1-----111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------1-121211111111122331111112111111111111-21111111121111121111111111211111111111122222222111111211111111111111111111111111111111111111111111111111111122111111111111111111211111111211111111111111111111111222112211212211112111111223211121111111111111111111121112111111111121111111111111111211111-111211--11121111111111111111-111111111111111111133311111111111111111111111111111111111111111111111111-1111112211111222122222111111111111121222212121333211221111111111111111111111111111111111111111111111111111111111------------------------------------111 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------1--2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 328 STR:RPRED 42.8 SQ:SECSTR ##############################ccEEEEEccccccccHHHHHHTccccTTccccTHHHHHHHHHHHHHccEEEEEEEccccEEEEEEEEccEEEEEEEEccTTccHHHHHHHHHHHTccccccccGGGHHHHHHHHHHHHHTTTccccEEEEEccccTTcEEEEEEEEEccccccccccEEEccccccTTTTGGGcccccccccccccTTTHHHHHHHHHHHHHHHHHHHHTTcTTcEEEEcccEEcTTcccEEcEEEEEcccccEEEEEccccccTTcHHHHHHTccccccccccHHHHHHHHHHHHHHHHHTTccccEEEEEEEEETTTTEEEEEEEEEccccccccc######################################################################################################################################################################################################################################################################################################################################################################################################################## DISOP:02AL 6-7| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEcccHHHHHHHcccccccEEcHHHHHHHHHHHHHccccEEEEEEEcccEEEEEEEEccEEEEEEEEEcccccHHHHHHHHHHHccccccEEcHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccEEEEEEEEccccEEEEEEEEEEEcccccHHHHHHHHHcccccEEEEcccccEEcHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEEcccccHHHHHHHHccccccEEcHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEcccccEEEEEEEEccccEEEEEEEEEEccccccHHHHHHHHHHccccEEcHHHHHHHHHHHHHccccEEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEEEEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEccccccHHcHHHHHcccEEEEEEEEEEEEEEEccccccccccEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEccccccccHHHEEEEccccEEEEEEccccccccccccccccEEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEccEEEEEEEEEEcccccccccEEEEEEEEEEEc //