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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57347.1
DDBJ      :             OmpA/MotB
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  299/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.79.7
:280 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   162->243 3cyqB PDBj 6e-07 29.6 %
:RPS:PDB   158->269 3cypD PDBj 5e-19 23.4 %
:RPS:SCOP  158->243 1r1mA  d.79.7.1 * 1e-14 24.7 %
:HMM:SCOP  143->266 1r1mA_ d.79.7.1 * 9e-28 34.5 %
:RPS:PFM   158->243 PF00691 * OmpA 1e-08 43.2 %
:HMM:PFM   158->256 PF00691 * OmpA 2e-22 39.8 93/97  
:BLT:SWISS 158->268 YTXE_BACME 1e-15 36.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57347.1 GT:GENE ABA57347.1 GT:PRODUCT OmpA/MotB GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 912229..913071 GB:FROM 912229 GB:TO 913071 GB:DIRECTION + GB:PRODUCT OmpA/MotB GB:PROTEIN_ID ABA57347.1 GB:DB_XREF GI:76882666 InterPro:IPR006665 LENGTH 280 SQ:AASEQ MEQDWVAAEDESQEERTGAPAWVITLADLMSLLMSFFVLLLSFSEMDVLKYKQVAGSMKFAFGVQREIKVKEPPKGTSIIAQEFSPGRPRPTPWNEIRQDTIDETKQTLDFSDAPTQDTEAEVAELQDKLQHEIDEGLITIETIKDRIIIRIREKGSFPSGSAIFSQEFKPALDKIRAILKKIEGKLIVAGHTDNMPIQTTRFRSNWELSTARAVSVVHYLLATHEISPRRFVLEGYADTQPLAPNENAANRARNRRIEITVLPGEGQDGEWRSIRDFDG GT:EXON 1|1-280:0| BL:SWS:NREP 1 BL:SWS:REP 158->268|YTXE_BACME|1e-15|36.9|111/218| TM:NTM 1 TM:REGION 24->46| SEG 29->46|lmsllmsffvlllsfsem| SEG 139->155|itietikdriiirirek| SEG 244->257|apnenaanrarnrr| BL:PDB:NREP 1 BL:PDB:REP 162->243|3cyqB|6e-07|29.6|81/133| RP:PDB:NREP 1 RP:PDB:REP 158->269|3cypD|5e-19|23.4|111/132| RP:PFM:NREP 1 RP:PFM:REP 158->243|PF00691|1e-08|43.2|81/97|OmpA| HM:PFM:NREP 1 HM:PFM:REP 158->256|PF00691|2e-22|39.8|93/97|OmpA| GO:PFM:NREP 1 GO:PFM GO:0009279|"GO:cell outer membrane"|PF00691|IPR006665| RP:SCP:NREP 1 RP:SCP:REP 158->243|1r1mA|1e-14|24.7|81/140|d.79.7.1| HM:SCP:REP 143->266|1r1mA_|9e-28|34.5|116/140|d.79.7.1|1/1|OmpA-like| OP:NHOMO 397 OP:NHOMOORG 300 OP:PATTERN -------------------------------------------------------------------- 111-------------------------------------1-----------------------1------------------11-11--1--1------1-------11-----------------------------------1---------------------------------------------111112122222222222112212222111-21111111121------------------------------------------------------------------------------------------11123222222221212111---111-----1121121111131111----1-----------22111111211111111111111-11-11111121--111---1-1--11----111111-----------------11------------------------------------11-211112111111112-1111-12121-2---1--1-1--1---2-112-11-1----------1-21113--1---2322--131221211--2-21-----------------------------32-1331111-1111112111111211111---1323-------1----1------------------------------------------------------1------------------------------11111-211-------------------------2122221212311112111---------1122211111121111111211222------1-111111------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 112 STR:RPRED 40.0 SQ:SECSTR #############################################################################################################################################################ccTTcccccHHHHHHHHHHHHHHHHcTcEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHTTccGGGEEEEEcTTcccccccccHHHHHHHcEEEEEEEccHHHH########### DISOP:02AL 1-4, 6-21, 53-138, 268-280| PSIPRED cccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEcccEEcccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEcccccccccccHHHHHcccEEEEEEEccccccHHHHHHHHHcc //