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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57351.1
DDBJ      :             transport system permease protein
Swiss-Prot:             

Homologs  Archaea  45/68 : Bacteria  633/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
f.22.1
:331 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   51->323 2nq2A PDBj 8e-27 35.3 %
:RPS:SCOP  46->323 1l7vA  f.22.1.1 * 7e-50 34.4 %
:HMM:SCOP  2->324 1l7vA_ f.22.1.1 * 7.9e-75 44.9 %
:RPS:PFM   46->321 PF01032 * FecCD 2e-39 41.8 %
:HMM:PFM   14->323 PF01032 * FecCD 5.8e-94 46.1 306/311  
:BLT:SWISS 46->323 Y087_METJA 2e-38 35.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57351.1 GT:GENE ABA57351.1 GT:PRODUCT transport system permease protein GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(915602..916597) GB:FROM 915602 GB:TO 916597 GB:DIRECTION - GB:PRODUCT transport system permease protein GB:PROTEIN_ID ABA57351.1 GB:DB_XREF GI:76882670 InterPro:IPR000522 LENGTH 331 SQ:AASEQ MKPAATLGLLALLAIGVLSSAPFLGLHPIPVKTILESTAGNIEAEIFWNLRVPRVMAAFLAGAGLAVSGMSFQALFRNPLATPFTLGVASGAALGAALYLRLGLSFALFNISGLSLSAFAGALGAILLVYGLTQVSRGFSAASILLAGVAISFFFSSLILFIQYLSDFTQSFHILRWLMGSLSIIGIEAVFEILPFVIGGTFVILLLSQELNLLATGELLAASRGLNVRRIRSLLFFVTSLTVGGIVAICGPIGFVGMMVPHICRLLVGADHRFLAPATLLFGGSFLVLCDTLARNLIAPAEIPVGVITALLGGPFFMWLLLKRTLEKSII GT:EXON 1|1-331:0| BL:SWS:NREP 1 BL:SWS:REP 46->323|Y087_METJA|2e-38|35.6|278/349| TM:NTM 9 TM:REGION 5->27| TM:REGION 53->75| TM:REGION 84->106| TM:REGION 114->136| TM:REGION 143->165| TM:REGION 182->204| TM:REGION 239->261| TM:REGION 273->295| TM:REGION 301->322| SEG 4->21|aatlgllallaigvlssa| SEG 86->104|lgvasgaalgaalylrlgl| SEG 111->128|isglslsafagalgaill| SEG 151->162|isfffsslilfi| BL:PDB:NREP 1 BL:PDB:REP 51->323|2nq2A|8e-27|35.3|255/308| RP:PFM:NREP 1 RP:PFM:REP 46->321|PF01032|2e-39|41.8|273/313|FecCD| HM:PFM:NREP 1 HM:PFM:REP 14->323|PF01032|5.8e-94|46.1|306/311|FecCD| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF01032|IPR000522| GO:PFM GO:0006810|"GO:transport"|PF01032|IPR000522| GO:PFM GO:0016020|"GO:membrane"|PF01032|IPR000522| RP:SCP:NREP 1 RP:SCP:REP 46->323|1l7vA|7e-50|34.4|273/324|f.22.1.1| HM:SCP:REP 2->324|1l7vA_|7.9e-75|44.9|314/324|f.22.1.1|1/1|ABC transporter involved in vitamin B12 uptake, BtuC| OP:NHOMO 2409 OP:NHOMOORG 679 OP:PATTERN --2-1--1-11--------2-112222213211--321212121164854D81-2222342-11---- ----24557786551------1---3----------3A45-3121332443-6312-42223-897336G4--------1221-----32221222-----11111122----------------13122111223144221137-6-2222-11--------42-1451-------------2331122-166DDEDECDD7EDEEED99AAAAEEE3759754444444HF377676776777777533543-1----1---33-1--1-----1--3332333111111111111112333333333333222---222223B4599998A95962422275635121421-2CA2--31222322215-41-1--122122221--2345443433333333337-11-11221322-6886563576752-12-23B222222-22222222-331--22----------------------------------1222221332331333311113333233211112--111-211141211211111-1521111111--1111-65222123-3111----1---34111121341253-22222-1-----1--211--22452241112211233121321131233322---1121------F3552855779598853-656377937569755555399A9A6654344444444444444833744453-555555545555--2-----------184D333263--1111--5--11-11-24212322342532322-445---------16454333337593311---------------111------------5-1-------------------------1121122222-11 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 267 STR:RPRED 80.7 SQ:SECSTR ########################################ccccccGGGTHHHHHHHHHHHHHHHHHHHHHHHHHTTcTTccTTTTcHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHH################HHcccTTTHHHHHHHTTcccTTccHHHHHHHHHHHHHHHHHHHTTTGGGGGGcccHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHccccccTTHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHc######## DISOP:02AL 327-331| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccc //