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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57369.1
DDBJ      :             Pseudouridylate synthase
Swiss-Prot:TRUD_NITOC   RecName: Full=tRNA pseudouridine synthase D;         EC=5.4.99.-;AltName: Full=tRNA-uridine isomerase D;AltName: Full=tRNA pseudouridylate synthase D;

Homologs  Archaea  39/68 : Bacteria  238/915 : Eukaryota  25/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:358 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->346 1si7A PDBj 3e-56 39.3 %
:RPS:SCOP  11->346 1sb7A  d.265.1.4 * 9e-91 39.9 %
:HMM:SCOP  5->347 1szwA_ d.265.1.4 * 8.9e-89 38.5 %
:RPS:PFM   35->343 PF01142 * TruD 8e-39 41.5 %
:HMM:PFM   11->343 PF01142 * TruD 2e-109 44.8 326/378  
:BLT:SWISS 1->358 TRUD_NITOC 0.0 100.0 %
:PROS 81->94|PS01268|UPF0024

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57369.1 GT:GENE ABA57369.1 GT:PRODUCT Pseudouridylate synthase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 936678..937754 GB:FROM 936678 GB:TO 937754 GB:DIRECTION + GB:PRODUCT Pseudouridylate synthase GB:PROTEIN_ID ABA57369.1 GB:DB_XREF GI:76882688 InterPro:IPR001656 LENGTH 358 SQ:AASEQ MEADEAGQQVLAYGGDPPLATALLRCRPEDFQVVEELPFALSGEGEHVWLLLCKRNTNTVWLARQLARIAGVRLVDVGYAGLKDRHGLTTQWFSVNLSGKKEPAWATALESATVQVLKVIRHSRKLQRGALKGNRFLLTLRHFQGDREVVCDRLTQIKVAGTPNYFGPQRFGRGGQNLDQVHRWFSGGKPPRGRYLRGMLLSAARAFLFNRVLSERVQAANWWQPLPGEALILDGSHGFFVAETIDEALQARVRRFDCHPSGPLWGRGESPAKRMSRALEEEVLADYALWREGLEQAGLKQERRSLRLMVADLEWSFPPAMDSLQLHFRLPAGAYATTVLREVVRTQEAVGQPFLLDE GT:EXON 1|1-358:0| SW:ID TRUD_NITOC SW:DE RecName: Full=tRNA pseudouridine synthase D; EC=5.4.99.-;AltName: Full=tRNA-uridine isomerase D;AltName: Full=tRNA pseudouridylate synthase D; SW:GN Name=truD; OrderedLocusNames=Noc_0856; SW:KW Complete proteome; Isomerase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->358|TRUD_NITOC|0.0|100.0|358/358| GO:SWS:NREP 2 GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| PROS 81->94|PS01268|UPF0024|PDOC00975| BL:PDB:NREP 1 BL:PDB:REP 11->346|1si7A|3e-56|39.3|333/340| RP:PFM:NREP 1 RP:PFM:REP 35->343|PF01142|8e-39|41.5|301/361|TruD| HM:PFM:NREP 1 HM:PFM:REP 11->343|PF01142|2e-109|44.8|326/378|TruD| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF01142|IPR001656| GO:PFM GO:0003723|"GO:RNA binding"|PF01142|IPR001656| GO:PFM GO:0009451|"GO:RNA modification"|PF01142|IPR001656| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF01142|IPR001656| RP:SCP:NREP 1 RP:SCP:REP 11->346|1sb7A|9e-91|39.9|333/342|d.265.1.4| HM:SCP:REP 5->347|1szwA_|8.9e-89|38.5|340/341|d.265.1.4|1/1|Pseudouridine synthase| OP:NHOMO 318 OP:NHOMOORG 302 OP:PATTERN ----------------1111--11-11-1---111111111121111111111111111111------ -----------------------------------------------------------------------------------1-2-------------------------------------------------------------------------------------------------11111---------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------11---1----1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-11111112-11--211111111111111111112112211111111111111111111111111111111--11111------11111111111111111-111111111111111111111111111111111111111111111111111--111111111111---1-----111111111111111-111--111-------1111111111111111111111---------1111111111111111111111111------1-----1-------------------------------------------------- ----1---1-----------------------------------11-------------------------------------------11--11---------------1---1------1--1-------------------1--------------11------1114--111--16----------------1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 335 STR:RPRED 93.6 SQ:SECSTR ##########cccccccccccccccccGGGEEEEEEccccccccccEEEEEEEEEcccHHHHHHHHHHHTTccTTcEEEccccccccEEEEEEEEEccccccccGTTTcccTTccEEEEEEEcccccTTcccEEEEEEEEccccccHHHHHHHHHHHHHHcEEccccGGGGcGGGHHHHHHHHHHTcccccccHHHHHHHHHHHHHHHHHHHHHHHTTcccTTcccTTcEEEETTcccEEEccGGGHHHHHHHHTTcEEEEEEEcccccccccHHHHHHHHHHTTTcHHHHHHHHHTTcccEEEEcEEccEEEEEEEEETT#EEEEEEEEETTccTHHHHTTTccc############ DISOP:02AL 1-4, 357-358| PSIPRED ccccccHHHHHHHHcccccccEEEEEcccccEEEEEccccccccccEEEEEEEEccccHHHHHHHHHHHHccccccEEEEEccccccEEEEEEEEEccHHHHHHHHHHHccccEEEEEEEEccccEEcccccccEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccEEEcccccHHHHHHHHHHccEEEEEccccccccccccHHHHHHHHHHHHccccHHHHHHcccccccEEEEEEEcccEEEEEcccccEEEEEEEccccHHHHHHHHHHHccHHHccHHHccc //