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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57395.1
DDBJ      :             Poly(A) polymerase, PcnB
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  831/915 : Eukaryota  176/199 : Viruses  1/175   --->[See Alignment]
a.173.1d.218.1
:401 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->199 1miyA PDBj 3e-24 37.6 %
:RPS:PDB   19->321 3bjdC PDBj 8e-36 11.8 %
:RPS:SCOP  4->131 1ou5A2  d.218.1.4 * 1e-34 33.3 %
:RPS:SCOP  133->334 1ou5A1  a.173.1.1 * 7e-24 16.1 %
:HMM:SCOP  1->132 1miwA2 d.218.1.4 * 5.5e-37 44.2 %
:HMM:SCOP  133->373 1miwA1 a.173.1.1 * 3.7e-49 39.5 %
:RPS:PFM   13->135 PF01743 * PolyA_pol 1e-29 55.0 %
:HMM:PFM   12->135 PF01743 * PolyA_pol 1.3e-39 41.0 122/126  
:BLT:SWISS 4->366 PCNB_HAEIN e-100 51.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57395.1 GT:GENE ABA57395.1 GT:PRODUCT Poly(A) polymerase, PcnB GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 965358..966563 GB:FROM 965358 GB:TO 966563 GB:DIRECTION + GB:PRODUCT Poly(A) polymerase, PcnB GB:PROTEIN_ID ABA57395.1 GB:DB_XREF GI:76882714 InterPro:IPR002646 InterPro:IPR010206 LENGTH 401 SQ:AASEQ MLYRLKKAGFSAYLVGGCVRDLLLGREPKDFDVTTDARPEQIRDLFRSCRLVGRRFRLAHLRFGREIIETATFRGPPEEGLSENGRIVSDNVYGTLEQDAWRRDFSVNALYYNIRDFSVVDYTRGMEDLEAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLGFTLHPDSETPIWELAPSLQEIPSARLFEEILKLFLGGCAVQTFELLRRFNLFRWLFPQTEACLGEEEQGFPRIFLAQALNNTDARIAAGKPVTPAFLFAALLWEPVRKLTERYQQEGVPEFQAMREAAEAVLANQTNHVALPRRFSLPMREIWYLQPRFAYRRGKRPLRLLQHPRFRAAYDFLLLRAQSGEDQEELCQWWTEFQEMGEKERLRLVRVSTKSRRRKPRKRVDKPVASTEV GT:EXON 1|1-401:0| BL:SWS:NREP 1 BL:SWS:REP 4->366|PCNB_HAEIN|e-100|51.8|363/452| SEG 205->218|fellrrfnlfrwlf| SEG 373->396|rlrlvrvstksrrrkprkrvdkpv| BL:PDB:NREP 1 BL:PDB:REP 1->199|1miyA|3e-24|37.6|186/395| RP:PDB:NREP 1 RP:PDB:REP 19->321|3bjdC|8e-36|11.8|287/320| RP:PFM:NREP 1 RP:PFM:REP 13->135|PF01743|1e-29|55.0|120/123|PolyA_pol| HM:PFM:NREP 1 HM:PFM:REP 12->135|PF01743|1.3e-39|41.0|122/126|PolyA_pol| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF01743|IPR002646| GO:PFM GO:0006396|"GO:RNA processing"|PF01743|IPR002646| GO:PFM GO:0016779|"GO:nucleotidyltransferase activity"|PF01743|IPR002646| RP:SCP:NREP 2 RP:SCP:REP 4->131|1ou5A2|1e-34|33.3|111/140|d.218.1.4| RP:SCP:REP 133->334|1ou5A1|7e-24|16.1|193/204|a.173.1.1| HM:SCP:REP 1->132|1miwA2|5.5e-37|44.2|129/139|d.218.1.4|1/1|Nucleotidyltransferase| HM:SCP:REP 133->373|1miwA1|3.7e-49|39.5|238/265|a.173.1.1|1/1|Poly A polymerase C-terminal region-like| OP:NHOMO 1238 OP:NHOMOORG 1009 OP:PATTERN ---------------------------------------------------1---------------- 1111111111111111111-11111111111111111111111111111111121111111111111111111111111111111112111111111--1111111111122222222222222211111111111---1-221-111212222122-212--122-1111--1-11----21-----22-111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111121111111111121-2111222211211212221211111111111111111---11111111111111111--1111--1111-11111-1111-11-11-1111-1--11111111111111-1111111111111111111111111111111111111-12222211111111111111211111111111121111112222211122212221121222222211211122112121--122--212-1231122222212-111111111111111111111111222212221112111112111111111111111-11212--1111111-1111111111111-111111111111111111111111111111111111111111111111111111111111111111-112222222222122111121111111111111111112211111111111111111111-----1---211122122122211222222222222221211222222111111112211111---------------------1111111111111 1111121-3-1111-11111111111111111111111111111111111121-11111111111-1112111111111111111122-11111111111-2-112---11121122111-11152111451-11111--2-111-111-1-11111-3111-111-11-311311111F2222223351751242221 ------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------ STR:NPRED 318 STR:RPRED 79.3 SQ:SECSTR HHHHHHHHHHHHHHHccccTTcHHTcccHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHcccGGGHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcGGccGcHHHHHTTTcccHHHHHHHHHTTTcccccHHHHHHTTHHHHHHHHHHHcccHHHHHHHHHHHHTTTTcGGGcHHHHHHHHHHHTTccccTTccccHHHHHHHHHHHHHHHcccTHHHHHHHH#HHHTcccHHHHHHHHHHTTccTTTTHH##HHTTcccccGGGcTTHHHHHTTTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHH################################################################################ DISOP:02AL 371-401| PSIPRED cHHHHHHcccEEEEEcHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHccHHccEEEEEEccEEEEEEEEccccccccccccccccccccccHHHHHHHcccccHHHHccccccEEEccccHHHHHHcccccccccHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccc //