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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57538.1
DDBJ      :             MscS Mechanosensitive ion channel
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  11/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.38.1f.34.1
:408 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   222->313 2vv5A PDBj 2e-07 35.4 %
:RPS:SCOP  207->283 2oauA1  b.38.1.3 * 2e-10 32.3 %
:HMM:SCOP  123->204 2oauA3 f.34.1.1 * 1.8e-05 35.4 %
:HMM:SCOP  205->283 2oauA1 b.38.1.3 * 9.8e-10 28.4 %
:RPS:PFM   163->284 PF00924 * MS_channel 9e-05 27.3 %
:HMM:PFM   164->313 PF00924 * MS_channel 3.9e-26 26.8 138/207  
:HMM:PFM   115->154 PF05552 * TM_helix 3.7e-07 30.0 40/53  
:HMM:PFM   2->88 PF10099 * RskA 0.00035 28.8 59/175  
:BLT:SWISS 204->324 Y700_METJA 3e-11 36.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57538.1 GT:GENE ABA57538.1 GT:PRODUCT MscS Mechanosensitive ion channel GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 1140356..1141582 GB:FROM 1140356 GB:TO 1141582 GB:DIRECTION + GB:PRODUCT MscS Mechanosensitive ion channel GB:PROTEIN_ID ABA57538.1 GB:DB_XREF GI:76882857 InterPro:IPR006685 InterPro:IPR008910 LENGTH 408 SQ:AASEQ MPPRLRKRLVKSIRNRARVRSSASRKAASLPRREVGVRAYERGARSRLQKFRQGTALAVALTAALLLLFGGMDETAGQEPNNTTVISALDSPAVKQPIKADPEASLEEATTTIRDLLSGFYGLLPKILIALLFLVAAWLLGKALRVITHRLLRGWERSEAIAALVRIALFLVAIGAGLSVIAGDARALVGSVGLAGLALSWALQTPIESFTGWVLNALRDYYRPGDRIAVGEVFGDVYRIDILTTTVWEAGGSGKHVAGAQPTGAFITFPNWEILRSNIINYSRDFPYVWDEVVFGIANESDLAYTVEIFRRVAGEVVGPMMRQPIAEYRRLLERERLAFDVEAEPQVYLSLAEAWTNCTIRYLVPVRQRRRWASELILALSIEMIRPEHKDRIIGGYPRREIDLLDN GT:EXON 1|1-408:0| BL:SWS:NREP 1 BL:SWS:REP 204->324|Y700_METJA|3e-11|36.7|109/324| TM:NTM 2 TM:REGION 121->143| TM:REGION 169->191| SEG 12->33|sirnrarvrssasrkaaslprr| SEG 55->68|talavaltaallll| SEG 123->134|llpkiliallfl| SEG 185->203|aralvgsvglaglalswal| SEG 328->338|eyrrllererl| BL:PDB:NREP 1 BL:PDB:REP 222->313|2vv5A|2e-07|35.4|79/256| RP:PFM:NREP 1 RP:PFM:REP 163->284|PF00924|9e-05|27.3|110/203|MS_channel| HM:PFM:NREP 3 HM:PFM:REP 164->313|PF00924|3.9e-26|26.8|138/207|MS_channel| HM:PFM:REP 115->154|PF05552|3.7e-07|30.0|40/53|TM_helix| HM:PFM:REP 2->88|PF10099|0.00035|28.8|59/175|RskA| GO:PFM:NREP 2 GO:PFM GO:0016020|"GO:membrane"|PF00924|IPR006685| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00924|IPR006685| RP:SCP:NREP 1 RP:SCP:REP 207->283|2oauA1|2e-10|32.3|65/67|b.38.1.3| HM:SCP:REP 123->204|2oauA3|1.8e-05|35.4|82/0|f.34.1.1|1/1|Mechanosensitive channel protein MscS (YggB), transmembrane region| HM:SCP:REP 205->283|2oauA1|9.8e-10|28.4|67/0|b.38.1.3|1/1|Sm-like ribonucleoproteins| OP:NHOMO 20 OP:NHOMOORG 20 OP:PATTERN ---------------------------1-11-----11--------1---111--------------- --1-----------------------------------------------------------------------------------------------------1------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----1--------------1-------------------------------------------------1---------------1---11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 79 STR:RPRED 19.4 SQ:SECSTR #############################################################################################################################################################################################################################ccTTcEEEccccEEEEEEEcccEEEEEcTTcc############EEEEEHHHHHTcccEEcccc#cEEEEEEEEEEcTTccHHHHHHHHHHH############################################################################################### DISOP:02AL 1-8, 15-33| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccEEEEEEEEEEEEEEEEEEcccccEEEcccccccEEEEccHHHHcccEEEEEccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccEEEEEEEccEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccccccc //