[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57547.1
DDBJ      :             condensin subunit ScpA
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  546/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.1.15
:269 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->62 2z87B PDBj 7e-04 27.4 %
:BLT:PDB   130->260 1xfdA PDBj 3e-04 26.9 %
:RPS:SCOP  30->154 1bhwA  c.1.15.3 * 2e-20 13.2 %
:RPS:SCOP  202->266 1w1wE  a.4.5.57 * 3e-12 18.8 %
:RPS:PFM   55->265 PF02616 * ScpA_ScpB 1e-28 47.6 %
:HMM:PFM   55->146 PF02616 * ScpA_ScpB 2.9e-24 39.1 92/242  
:HMM:PFM   196->265 PF02616 * ScpA_ScpB 1.5e-09 33.3 69/242  
:BLT:SWISS 19->266 SCPA_COXBU 2e-88 64.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57547.1 GT:GENE ABA57547.1 GT:PRODUCT condensin subunit ScpA GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 1148449..1149258 GB:FROM 1148449 GB:TO 1149258 GB:DIRECTION + GB:PRODUCT condensin subunit ScpA GB:PROTEIN_ID ABA57547.1 GB:DB_XREF GI:76882866 InterPro:IPR003768 LENGTH 269 SQ:AASEQ MSESSGQVPSSEASALAVVRGQPLIELPTDLYIPPDALEVFLEAFEGPLDLLLYLIRRQNLDVLDIPIAVITHQYMEYIEILGELRLELAAEYLVMAAWLAEIKSRMLLPRPQESAEEEGDPRMELVRRLQEYERYKKAAEDLDSLPRVGRDIFETGVHVPPGQVTKPQPTLELTDLLFALKGVLARADLFSHHHVAQETLSVRERMGEVLSRVEADSFFEFTALLHPEEGRLGVVVTFLAILELIKESLLEVVQAESYGPLHVRAVAA GT:EXON 1|1-269:0| BL:SWS:NREP 1 BL:SWS:REP 19->266|SCPA_COXBU|2e-88|64.5|248/266| BL:PDB:NREP 2 BL:PDB:REP 1->62|2z87B|7e-04|27.4|62/591| BL:PDB:REP 130->260|1xfdA|3e-04|26.9|130/723| RP:PFM:NREP 1 RP:PFM:REP 55->265|PF02616|1e-28|47.6|208/220|ScpA_ScpB| HM:PFM:NREP 2 HM:PFM:REP 55->146|PF02616|2.9e-24|39.1|92/242|ScpA_ScpB| HM:PFM:REP 196->265|PF02616|1.5e-09|33.3|69/242|ScpA_ScpB| RP:SCP:NREP 2 RP:SCP:REP 30->154|1bhwA|2e-20|13.2|121/392|c.1.15.3| RP:SCP:REP 202->266|1w1wE|3e-12|18.8|64/70|a.4.5.57| OP:NHOMO 548 OP:NHOMOORG 547 OP:PATTERN -------------------------------------------------------------------- 111-111111111111111-1111111111111111-11111---1-111111111-1---1---1------------1111-----------------------11-1---------------111111111-11111---------------------------------------------------111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111-11-1-111111111-111111111-----111111111111111111111111---1--1--111-1111111111111111-111111111111111111111-1111-----------------------------11-11-1111111111111111111111111111111111111111111111111111111111111111111111111-1-----------111111111111111---------------------------1111-111-111-1111111111111111111--11111--------------------------------------------------------------------------------------------11111111111111----------------11111111111111111111111111111------------------------11111111111111---1111111--------11-----1-1111-1-11111--1-11111-1111111-1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 192 STR:RPRED 71.4 SQ:SECSTR EEEccccHHHHHHHHTTTccccEEEEccTTcEEcTTHHHHHHHHHHHcccccEEEEEEEEEc###################################################################EEccHHHHHHHHTcc#ccccccccEEETTEEEcccEEccccccccccEEEEccccTTcccccccccccHHHHHHHTTccEEEccccTTccccHHHHHHTTTTcTTTHHHHHHHHHHHccccEEEEEEEEEE######### DISOP:02AL 1-15, 110-120| PSIPRED ccccccccccHHHccHHHccccHHHccccHHccccccEEEEEccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHccEEEEEEccccccEEEEEEcc //