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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57629.1
DDBJ      :             NADH (or F420H2) dehydrogenase, subunit C/D
Swiss-Prot:NUOCD_NITOC  RecName: Full=NADH-quinone oxidoreductase subunit C/D;         EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit C/D;AltName: Full=NDH-1 subunit C/D;

Homologs  Archaea  67/68 : Bacteria  603/915 : Eukaryota  155/199 : Viruses  0/175   --->[See Alignment]
d.307.1e.18.1
:593 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   90->172 3i9v5 PDBj 8e-19 55.6 %
:BLT:PDB   220->593 3iam4 PDBj 2e-86 42.2 %
:RPS:PDB   18->224 2ci5A PDBj 3e-23 10.6 %
:RPS:PDB   201->569 3curH PDBj 3e-90 13.9 %
:RPS:SCOP  22->221 2fug51  d.307.1.1 * 5e-42 28.7 %
:RPS:SCOP  219->593 2fug41  e.18.1.2 * e-114 44.1 %
:HMM:SCOP  16->224 2fug51 d.307.1.1 * 1.1e-58 39.8 %
:HMM:SCOP  219->593 2fug41 e.18.1.2 * 4.3e-129 39.2 %
:RPS:PFM   68->165 PF00329 * Complex1_30kDa 6e-26 62.2 %
:RPS:PFM   201->300 PF10456 * BAR_3_WASP_bdg 3e-04 22.0 %
:RPS:PFM   323->593 PF00346 * Complex1_49kDa 1e-80 52.8 %
:HMM:PFM   323->593 PF00346 * Complex1_49kDa 4.6e-114 47.6 271/272  
:HMM:PFM   53->165 PF00329 * Complex1_30kDa 1.4e-38 55.9 102/103  
:BLT:SWISS 1->593 NUOCD_NITOC 0.0 100.0 %
:PROS 246->257|PS00535|COMPLEX1_49K

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57629.1 GT:GENE ABA57629.1 GT:PRODUCT NADH (or F420H2) dehydrogenase, subunit C/D GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(1227480..1229261) GB:FROM 1227480 GB:TO 1229261 GB:DIRECTION - GB:PRODUCT NADH (or F420H2) dehydrogenase, subunit C/D GB:PROTEIN_ID ABA57629.1 GB:DB_XREF GI:76882948 InterPro:IPR001135 InterPro:IPR001268 InterPro:IPR002086 InterPro:IPR010218 InterPro:IPR010219 LENGTH 593 SQ:AASEQ MRSSLQQPTPPMAGFTPIAEILYHQFGEANFIRQETHDGVPTFWITKAQVSKILRYLKAELAPPYPMLYDLTAIDERVRTHRPGQPASDFTLVYHLLSFIRNEDLRLKVPLQGESPSLPTITPIWPAANWYEREVWDLFGINFEGHPHLSRILLPPTWQGHPLRKDHPARATEVDPFTLSEEKQAREQEALRFRPEDWGMRRASGSTDFMFLNLGPNHPSVHGVFRIVLQLDGEEIVDAVPDIGYHHRGAEKMGERQSWHTYIPYTDRIDYLGGVMNNLPYVLAVEQLAGIQVPERVKVIRVMLAELFRIASHLVFYGTFAQDVGQLSPVFYMFTDRERVFDIIEAICGGRMHPEWFRIGGVAQDLPRGWDDLIRDFLRYLPPRLAKYDKIAMNNRILKKRTQGVGSYTIAEAMEWGVTGPGLRACGLEWDFRKQRPYSGYEQFQFDIPVAQHGDCYDRCWVRIEEMRQSLRIIEQCLNHMPAGSYKADHPLTTPPRKERTMHDIETLISHFLSVSWGPVIPAGEACVGIEATKGNNSYYLISDGHTQPYRVRIRTPSFPHLQMIPLISRGSMVPDLIATLGSIDFVMADVDR GT:EXON 1|1-593:0| SW:ID NUOCD_NITOC SW:DE RecName: Full=NADH-quinone oxidoreductase subunit C/D; EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit C/D;AltName: Full=NDH-1 subunit C/D; SW:GN Name=nuoC; Synonyms=nuoCD, nuoD; OrderedLocusNames=Noc_1125; SW:KW Cell inner membrane; Cell membrane; Complete proteome; Membrane;Multifunctional enzyme; NAD; Oxidoreductase; Quinone; Transport;Ubiquinone. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->593|NUOCD_NITOC|0.0|100.0|593/593| GO:SWS:NREP 8 GO:SWS GO:0005886|"GO:plasma membrane"|Cell inner membrane| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0003824|"GO:catalytic activity"|Multifunctional enzyme| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0048038|"GO:quinone binding"|Quinone| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 246->257|PS00535|COMPLEX1_49K|PDOC00521| BL:PDB:NREP 2 BL:PDB:REP 90->172|3i9v5|8e-19|55.6|81/196| BL:PDB:REP 220->593|3iam4|2e-86|42.2|374/378| RP:PDB:NREP 2 RP:PDB:REP 18->224|2ci5A|3e-23|10.6|189/272| RP:PDB:REP 201->569|3curH|3e-90|13.9|360/545| RP:PFM:NREP 3 RP:PFM:REP 68->165|PF00329|6e-26|62.2|90/103|Complex1_30kDa| RP:PFM:REP 201->300|PF10456|3e-04|22.0|100/235|BAR_3_WASP_bdg| RP:PFM:REP 323->593|PF00346|1e-80|52.8|254/254|Complex1_49kDa| HM:PFM:NREP 2 HM:PFM:REP 323->593|PF00346|4.6e-114|47.6|271/272|Complex1_49kDa| HM:PFM:REP 53->165|PF00329|1.4e-38|55.9|102/103|Complex1_30kDa| GO:PFM:NREP 6 GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00329|IPR001268| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00329|IPR001268| GO:PFM GO:0016651|"GO:oxidoreductase activity, acting on NADH or NADPH"|PF00346|IPR001135| GO:PFM GO:0048038|"GO:quinone binding"|PF00346|IPR001135| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF00346|IPR001135| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00346|IPR001135| RP:SCP:NREP 2 RP:SCP:REP 22->221|2fug51|5e-42|28.7|178/191|d.307.1.1| RP:SCP:REP 219->593|2fug41|e-114|44.1|370/370|e.18.1.2| HM:SCP:REP 16->224|2fug51|1.1e-58|39.8|191/0|d.307.1.1|1/1|Nqo5-like| HM:SCP:REP 219->593|2fug41|4.3e-129|39.2|375/0|e.18.1.2|1/1|HydB/Nqo4-like| OP:NHOMO 1831 OP:NHOMOORG 825 OP:PATTERN 22313121111111123112222121121311212222222222122412334132253532231-11 44425---------22222-22--22222222222222223222-2--2-----------44334224442--------21122322311111---2--2-22--34422--------------2222222222425445544452222222222222222222224222222222222222222222--1-2-222222222222222------222222----------2-------------------------------------------------------------------------------------------1---2----------2-------1-1--4--213332----33--211--45-222222222423223223644422222222222-22222222222222224443424433222222333322222222222533-23342232222222222222222222222222222222-222222222222222222232222222222222222222222222342222222222222222222232221-1-3---552223-54435451B555525-2123222222222222222222343433221---------------------1----11--322211111122222213332322233-3333322333323333333222211122222222222222222233332231-21111111111111122222222222--1-----1----------11111111111-1111111111111-1112222222222--------------23222222222222223-332322------------------------------------131111-11-372 -1----2-----32222222222222222222222222222222222222222222222222222----2--222------22222---24222252222222223-22-45422312222121332423E2-333222222222222212212222222432325433123442222--------3242-6------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 564 STR:RPRED 95.1 SQ:SECSTR #################cHHHHHHHHHHH#HHHHHTTcccEEEEEcccTTcTTTTcGG#GGEEEETTEEEEcccccGGG##########TTHHHHHHHHHHHTTcEEEEcccTTccccccccccGGGEEEccccEEEEEcccHHHHHHHHHHcTTccEEEEEccccccEEEEETTEEEEcccHHHHHHHHHHHHHccccccccccccccEEEEEcccccHccccEEEEEEEETTEEEEEEETEEcccccHHHHHTTccGGGHHHHHHTTccTTTTHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTccTGGGGHHHHHHHHHHHHHHTcccGGGTTcTTTTccTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEETTTEEccGGGGcHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTGGGGGccccccEEEccEEEcccccHHHHHHHEEEccEEEcTTcTTccccccccGGGEEEEcTTccccTTcTTccGGGcccccccccccccTTcTTccccccEEEETTccccccHHHHHHHHHcTTccHHHHHHHHHTcccHHccHH DISOP:02AL 1-9| PSIPRED cccccccccccHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEEEEEcccccccccccccEEEEEEEEEcccccEEEEEEEEcccccccccHHHHHccccHHHHHHHHHHcEEEccccccccccccccccccccHHHHcccccccccccccccEEEcccccEEccccccccccccccccEEEEEEccccccccccEEEEEEEEccEEEEEEEEEEEcHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHccccEEcHHHcccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEEccccEEEEEEEEccccHHHHHHHHHHHcccccHHHHHHHHHccccccccc //