[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57649.1
DDBJ      :             phenylalanyl-tRNA synthetase beta subunit
Swiss-Prot:SYFB_NITOC   RecName: Full=Phenylalanyl-tRNA synthetase beta chain;         EC=6.1.1.20;AltName: Full=Phenylalanine--tRNA ligase beta chain;         Short=PheRS;

Homologs  Archaea  40/68 : Bacteria  894/915 : Eukaryota  54/199 : Viruses  0/175   --->[See Alignment]
a.6.1b.153.1b.40.4d.104.1d.58.13
:793 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->791 2rhsD PDBj e-111 33.2 %
:RPS:PDB   1->779 1b70B PDBj 0.0 36.4 %
:RPS:SCOP  45->202 1e7zA  b.40.4.4 * 4e-35 22.0 %
:RPS:SCOP  199->396 1b70B6  b.153.1.1 * 1e-38 40.1 %
:RPS:SCOP  402->475 1b70B2  a.6.1.1 * 6e-21 39.2 %
:RPS:SCOP  474->689 1b70B5  d.104.1.1 * 4e-48 35.3 %
:RPS:SCOP  695->779 1b70B4  d.58.13.1 * 7e-24 36.5 %
:HMM:SCOP  35->200 1ntgA_ b.40.4.4 * 1.3e-45 42.2 %
:HMM:SCOP  194->399 1pysB6 b.153.1.1 * 3.3e-75 49.8 %
:HMM:SCOP  402->476 1pysB2 a.6.1.1 * 1.4e-18 45.3 %
:HMM:SCOP  467->687 1pysB5 d.104.1.1 * 5.1e-50 36.5 %
:HMM:SCOP  693->792 1pysB4 d.58.13.1 * 7.5e-30 43.0 %
:RPS:PFM   49->144 PF01588 * tRNA_bind 1e-18 46.7 %
:RPS:PFM   212->382 PF03483 * B3_4 9e-43 48.2 %
:RPS:PFM   406->471 PF03484 * B5 2e-13 50.0 %
:RPS:PFM   645->722 PF01810 * LysE 8e-05 34.6 %
:RPS:PFM   699->792 PF03147 * FDX-ACB 7e-19 42.6 %
:HMM:PFM   212->385 PF03483 * B3_4 5.8e-73 54.6 174/174  
:HMM:PFM   699->792 PF03147 * FDX-ACB 2.5e-29 43.6 94/94  
:HMM:PFM   405->471 PF03484 * B5 1.1e-20 49.3 67/70  
:HMM:PFM   46->140 PF01588 * tRNA_bind 1.1e-20 42.0 81/95  
:BLT:SWISS 1->793 SYFB_NITOC 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57649.1 GT:GENE ABA57649.1 GT:PRODUCT phenylalanyl-tRNA synthetase beta subunit GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 1252540..1254921 GB:FROM 1252540 GB:TO 1254921 GB:DIRECTION + GB:PRODUCT phenylalanyl-tRNA synthetase beta subunit GB:PROTEIN_ID ABA57649.1 GB:DB_XREF GI:76882968 InterPro:IPR002547 InterPro:IPR004532 InterPro:IPR005121 InterPro:IPR005146 InterPro:IPR005147 LENGTH 793 SQ:AASEQ MKFSEAWLRTWVDPDISRETLVERLTLAGLEVESTEPVAAPFKGVKAARIVAVEPHPSAPRLQVCQVDIGSGSLLTVVCGAPNARAGLWAPLAIIGAQLPAGIRIELAKLQGVESFGMLCSAAELGLAEQSAGLLELPEGDFPGVDLHEFLQFDDISIEVDLTPNRSDCLSVAGIAREVGVLTQSPVTEPAIEPVTAQIGDIFPVTVTAPAACPRYLGRVLRGVNPQTQTPWWLRERLRRSGIRSLGLVVDVTNYVMLELGQPMHAFDLERLKGGIQVRYGQADEALTLLDGTHLRLDEETLIIADQQRALALAGIMGGEESGINNQTRHLFLESAFFNPSVIAGRARFYGLHTDSSHRFERGVDPELPRRAMERATALLLEIAGGQAGPVIEVADSSQLPPQATIILRKARIHRVLGVEIAESRITEQLTRLGLKVERIEEGWEVKVPSFRFDLALEVDLIEELGRLYGYDRLPSTRPVGQIQPVLKTEAGAFIDRIRQVLVDRDYQEAITYSFVDQELQQLLDPEGSPLVLNNPISTDMAVMRTTLWTGLVQALQYNSYRQQERIRFFEYGLTFNGQLADLKQERTIAGLISGASYPEQWGLVGRPADFFDLKGDVEAILSLVGEQRNCFEFMAASHPALHPGQSAQILREGQAVGWLGALHPWLESKLDLSSRAYLFSLQLEAVERGSLPVFQSLSKFPAIRRDIAFLVNANIPVQVVFDCLKGCESDILKEFQLFDVYTGKGIDPDKKSLALKLILQHPSYTLTDDRVNIFIERVMALLVTELGAIIRE GT:EXON 1|1-793:0| SW:ID SYFB_NITOC SW:DE RecName: Full=Phenylalanyl-tRNA synthetase beta chain; EC=6.1.1.20;AltName: Full=Phenylalanine--tRNA ligase beta chain; Short=PheRS; SW:GN Name=pheT; OrderedLocusNames=Noc_1145; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Magnesium; Metal-binding; Nucleotide-binding;Protein biosynthesis; RNA-binding; tRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->793|SYFB_NITOC|0.0|100.0|793/793| GO:SWS:NREP 9 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0000049|"GO:tRNA binding"|tRNA-binding| SEG 234->248|lrerlrrsgirslgl| BL:PDB:NREP 1 BL:PDB:REP 1->791|2rhsD|e-111|33.2|773/785| RP:PDB:NREP 1 RP:PDB:REP 1->779|1b70B|0.0|36.4|760/775| RP:PFM:NREP 5 RP:PFM:REP 49->144|PF01588|1e-18|46.7|92/100|tRNA_bind| RP:PFM:REP 212->382|PF03483|9e-43|48.2|170/172|B3_4| RP:PFM:REP 406->471|PF03484|2e-13|50.0|66/70|B5| RP:PFM:REP 645->722|PF01810|8e-05|34.6|78/190|LysE| RP:PFM:REP 699->792|PF03147|7e-19|42.6|94/94|FDX-ACB| HM:PFM:NREP 4 HM:PFM:REP 212->385|PF03483|5.8e-73|54.6|174/174|B3_4| HM:PFM:REP 699->792|PF03147|2.5e-29|43.6|94/94|FDX-ACB| HM:PFM:REP 405->471|PF03484|1.1e-20|49.3|67/70|B5| HM:PFM:REP 46->140|PF01588|1.1e-20|42.0|81/95|tRNA_bind| GO:PFM:NREP 17 GO:PFM GO:0000049|"GO:tRNA binding"|PF01588|IPR002547| GO:PFM GO:0003723|"GO:RNA binding"|PF03483|IPR005146| GO:PFM GO:0004826|"GO:phenylalanine-tRNA ligase activity"|PF03483|IPR005146| GO:PFM GO:0006412|"GO:translation"|PF03483|IPR005146| GO:PFM GO:0000287|"GO:magnesium ion binding"|PF03484|IPR005147| GO:PFM GO:0003723|"GO:RNA binding"|PF03484|IPR005147| GO:PFM GO:0005524|"GO:ATP binding"|PF03484|IPR005147| GO:PFM GO:0006412|"GO:translation"|PF03484|IPR005147| GO:PFM GO:0006432|"GO:phenylalanyl-tRNA aminoacylation"|PF03484|IPR005147| GO:PFM GO:0006865|"GO:amino acid transport"|PF01810|IPR001123| GO:PFM GO:0016020|"GO:membrane"|PF01810|IPR001123| GO:PFM GO:0000049|"GO:tRNA binding"|PF03147|IPR005121| GO:PFM GO:0000287|"GO:magnesium ion binding"|PF03147|IPR005121| GO:PFM GO:0004826|"GO:phenylalanine-tRNA ligase activity"|PF03147|IPR005121| GO:PFM GO:0005524|"GO:ATP binding"|PF03147|IPR005121| GO:PFM GO:0006432|"GO:phenylalanyl-tRNA aminoacylation"|PF03147|IPR005121| GO:PFM GO:0008033|"GO:tRNA processing"|PF03147|IPR005121| RP:SCP:NREP 5 RP:SCP:REP 45->202|1e7zA|4e-35|22.0|150/173|b.40.4.4| RP:SCP:REP 199->396|1b70B6|1e-38|40.1|197/209|b.153.1.1| RP:SCP:REP 402->475|1b70B2|6e-21|39.2|74/75|a.6.1.1| RP:SCP:REP 474->689|1b70B5|4e-48|35.3|204/207|d.104.1.1| RP:SCP:REP 695->779|1b70B4|7e-24|36.5|85/94|d.58.13.1| HM:SCP:REP 35->200|1ntgA_|1.3e-45|42.2|161/0|b.40.4.4|1/1|Nucleic acid-binding proteins| HM:SCP:REP 194->399|1pysB6|3.3e-75|49.8|205/209|b.153.1.1|1/1|PheT/TilS domain| HM:SCP:REP 402->476|1pysB2|1.4e-18|45.3|75/75|a.6.1.1|1/1|Putative DNA-binding domain| HM:SCP:REP 467->687|1pysB5|5.1e-50|36.5|203/207|d.104.1.1|1/1|Class II aaRS and biotin synthetases| HM:SCP:REP 693->792|1pysB4|7.5e-30|43.0|100/104|d.58.13.1|1/1|Anticodon-binding domain of PheRS| OP:NHOMO 1119 OP:NHOMOORG 988 OP:PATTERN 111----11-1----1-1-----1111--1-1-1111-111-1111--11111111111111----1- 1111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222221121111111111111112211222222212222211221221122222222222222222222222221222222222222222222222211111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111-111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111----------111112-1121111---1212-11121111111111111 ------1-------1------------------------------------------------------1-----------111111-------------------1-1-----1--1-11------1-191-111--1-1---1--------1-1-1-1---21---11-1--111-11112--1114-21112222- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 792 STR:RPRED 99.9 SQ:SECSTR cEEEHHHHHTTcTTcccHHHHHHHHHHHTccEEEEEEcccccTTEEEEEEEEEEEETTTcTEEEEEEEcccEccEEEEEccccccTTcEEEEEcTTcccccccccccEEccccEEccEEccHHHHTccccccccccccTTcccTTccGGGTccccEEEEEcccTTcGGGGcHHHHHHHHHHTTccccccccccccEEccccccEEEEccTTTccEEEEEEEEcccHcccccHHHHHHHHHTTcccccHHHHHHHHHHHHccccEEEEEGGGTcTEEEEEEccTTcEEEcTTccEEEccTTcEEEEEEEEEEEETTTEEcTTTcccTTccEEEEEEEEccHHHHHHHHHHTTcccHHHHHHHHcccTTcHHHHHHHHHHHHHHHTccEEEcccETcEEccccccccEEEcHHHHHHHHTccccHHHHHHHHHHTTcEEEcccccEEEEccTTccccccHHHHHHHHHHHHcGGGcccccccccccGGGTTHHHHHHHHHHHHHHHHTcEEcccccEEcTTHHHHTTcccccccccccccGGGcEEccccHHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEEEEcccEEccccEccEEccHHHHHHHHHHHHHHHTccEEEcEEEccccTTccTTcccEEEETTEEEEEEEEccHHHHHHTTcccccEEEEEEEcccccccccccccccccccEEEEEcccEEccccHHHHHHHHHHHccTTEEEEEEEEccccTTccTTEEccEEEEEEccccccccHHHHHHHHHHHccccEEETTEEcc# DISOP:02AL 792-794| PSIPRED ccccHHHHHHHccccccHHHHHHHHHHcccccccccccccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEcccHHHccccEEEEEEccccccccEEEEEEEEEcHHHHHHHHHHHHcccccccccEEEccccccccccHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEccccccEEEEEEEEccccccccHHHHHHHHHHccccccccEEccccEEEcccccccccccHHHccccEEEEEcccccEEEEEccEEEEEccccEEEEcccEEEEEccccccccccccccccEEEEEEEcccHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccccEEEEcHHHHHHHHcccccHHHHHHHHHHcccEEEEcccEEEEEccccccccccHHHHHHHHHHHHcHHHccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccccccccEEEEEEccEEEEEEEEEcHHHHHHccccccEEEEEEcHHHHccccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEEEEEEccccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccEEEc //