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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57672.1
DDBJ      :             DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  872/915 : Eukaryota  167/199 : Viruses  0/175   --->[See Alignment]
a.96.1
:236 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->223 2abkA PDBj 6e-77 66.8 %
:RPS:PDB   16->222 2abkA PDBj 2e-59 68.6 %
:RPS:SCOP  14->222 1ornA  a.96.1.1 * 4e-74 43.1 %
:HMM:SCOP  15->225 2abkA_ a.96.1.1 * 4e-70 46.0 %
:RPS:PFM   51->177 PF00730 * HhH-GPD 5e-20 45.7 %
:HMM:PFM   48->180 PF00730 * HhH-GPD 6.7e-24 37.0 100/121  
:HMM:PFM   201->217 PF10576 * EndIII_4Fe-2S 3.6e-08 58.8 17/17  
:BLT:SWISS 14->223 END3_HAEIN 7e-80 68.4 %
:PROS 201->217|PS00764|ENDONUCLEASE_III_1
:PROS 116->145|PS01155|ENDONUCLEASE_III_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57672.1 GT:GENE ABA57672.1 GT:PRODUCT DNA-(apurinic or apyrimidinic site) lyase / endonuclease III GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(1278893..1279603) GB:FROM 1278893 GB:TO 1279603 GB:DIRECTION - GB:PRODUCT DNA-(apurinic or apyrimidinic site) lyase / endonuclease III GB:PROTEIN_ID ABA57672.1 GB:DB_XREF GI:76882991 InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR004036 InterPro:IPR005759 LENGTH 236 SQ:AASEQ MSCPSAFKNARPSMKKNAEIQEIFSRFQAANPKPTTELKHQTPFELLIAVILSAQATDKGVNKATAQLFPVANTPQAILDLGEEGLKHYIKTIGLFNSKAKNILQTCRLLLEQHGGQVPSDRVALEALAGVGRKTANVMLNTAFGQPTIAVDTHIFRVANRIGLASGKTPRQVEDTLTRVVPDEFLHDAHHWLILHGRYVCTARNPRCQECLINDLCDYYSKIAKEKSRGLKKTAS GT:EXON 1|1-236:0| BL:SWS:NREP 1 BL:SWS:REP 14->223|END3_HAEIN|7e-80|68.4|209/211| PROS 201->217|PS00764|ENDONUCLEASE_III_1|PDOC00615| PROS 116->145|PS01155|ENDONUCLEASE_III_2|PDOC00615| BL:PDB:NREP 1 BL:PDB:REP 22->223|2abkA|6e-77|66.8|202/211| RP:PDB:NREP 1 RP:PDB:REP 16->222|2abkA|2e-59|68.6|207/211| RP:PFM:NREP 1 RP:PFM:REP 51->177|PF00730|5e-20|45.7|127/144|HhH-GPD| HM:PFM:NREP 2 HM:PFM:REP 48->180|PF00730|6.7e-24|37.0|100/121|HhH-GPD| HM:PFM:REP 201->217|PF10576|3.6e-08|58.8|17/17|EndIII_4Fe-2S| GO:PFM:NREP 1 GO:PFM GO:0006284|"GO:base-excision repair"|PF00730|IPR003265| RP:SCP:NREP 1 RP:SCP:REP 14->222|1ornA|4e-74|43.1|209/214|a.96.1.1| HM:SCP:REP 15->225|2abkA_|4e-70|46.0|211/211|a.96.1.1|1/1|DNA-glycosylase| OP:NHOMO 1595 OP:NHOMOORG 1107 OP:PATTERN 22111111212222211121112132242222111221111111111112224111111111211111 2121112222211111111-111111111111122211111111121121--111221--1112111112111111111111123222111111111--11211111121222222222222222111111111313222222221113122122111111111113111111121111111132311111222222222222222222222222222222232222222222222222212222222122112111111-11111112221----2221111111111111111111111111111111111111111111122221111111111111111111311114112122111211121111211211122112222112221111122222222222221-3323312321111111111111111111122121221111111111111111111111111111111111111111111111111212111111111111111111111111111111111111122211211112111221132211111212112111111212232121222112212113111124423111111111111112221111112122222121124112211131121212211131--1221311-11112112221111111111-111111111111111111122222121222222222222222221111111211222222222221112111112222211212222222112222221-11111111211111221222222222211111111122222212212112211111111111111111111222211111111111-------------------------1221212121211 21-1121-3111121111-1111111-1111111111-11-1111111121111-11-1---1--111111111122-2211111111-1-11133111111121211512-1112321121121111-GH6-313----32211-1-1-21-2132-111112111111-113121229223113--1-311132321 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 230 STR:RPRED 97.5 SQ:SECSTR #####HHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHTTTccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHTTcTTHHHHHHHHHHHHHHHHHHTTTcccccHHHHHHcTTccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccGGGTTTHHHHHHHHHHHTcccccccGGGcTTGGGcccTTccGGGccccccccc# DISOP:02AL 1-17, 220-236| PSIPRED ccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccc //