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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57707.1
DDBJ      :             methionine synthase (B12-dependent)
Swiss-Prot:             

Homologs  Archaea  19/68 : Bacteria  639/915 : Eukaryota  103/199 : Viruses  0/175   --->[See Alignment]
a.46.1c.1.21c.1.26c.23.6d.173.1
:1232 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->528 1q7zA PDBj 3e-49 29.6 %
:BLT:PDB   657->1231 3bulA PDBj 0.0 61.4 %
:RPS:PDB   1->623 3bolB PDBj 2e-82 25.7 %
:RPS:PDB   656->1230 3bulA PDBj 6e-89 61.4 %
:RPS:SCOP  10->341 1q7mA2  c.1.26.1 * 3e-57 32.5 %
:RPS:SCOP  362->609 1f6yA  c.1.21.2 * 4e-45 23.5 %
:RPS:SCOP  656->743 1bmtA1  a.46.1.1 * 7e-34 73.9 %
:RPS:SCOP  751->893 1bmtA2  c.23.6.1 * 1e-08 68.5 %
:RPS:SCOP  908->1231 1k7yA3  d.173.1.1 * e-127 58.6 %
:HMM:SCOP  7->402 1umyA_ c.1.26.1 * 2.9e-127 51.3 %
:HMM:SCOP  359->634 1f6yA_ c.1.21.2 * 6.2e-94 46.4 %
:HMM:SCOP  654->743 1bmtA1 a.46.1.1 * 6.5e-30 47.8 %
:HMM:SCOP  744->899 1bmtA2 c.23.6.1 * 2.9e-48 42.3 %
:HMM:SCOP  904->1233 1mskA_ d.173.1.1 * 1.1e-135 55.7 %
:RPS:PFM   19->328 PF02574 * S-methyl_trans 2e-84 58.4 %
:RPS:PFM   382->552 PF00809 * Pterin_bind 7e-19 39.6 %
:RPS:PFM   662->743 PF02607 * B12-binding_2 1e-25 64.6 %
:RPS:PFM   753->841 PF02310 * B12-binding 1e-22 56.2 %
:RPS:PFM   1062->1196 PF02965 * Met_synt_B12 2e-56 72.4 %
:HMM:PFM   19->329 PF02574 * S-methyl_trans 7.6e-101 43.1 297/305  
:HMM:PFM   1061->1196 PF02965 * Met_synt_B12 3.3e-50 46.3 134/136  
:HMM:PFM   359->571 PF00809 * Pterin_bind 4.5e-47 31.6 196/210  
:HMM:PFM   661->742 PF02607 * B12-binding_2 6.4e-34 54.9 82/84  
:HMM:PFM   751->845 PF02310 * B12-binding 1.7e-23 38.9 95/121  
:BLT:SWISS 5->1231 METH_ECOLI 0.0 65.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57707.1 GT:GENE ABA57707.1 GT:PRODUCT methionine synthase (B12-dependent) GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(1316055..1319753) GB:FROM 1316055 GB:TO 1319753 GB:DIRECTION - GB:PRODUCT methionine synthase (B12-dependent) GB:PROTEIN_ID ABA57707.1 GB:DB_XREF GI:76883026 InterPro:IPR000489 InterPro:IPR003726 InterPro:IPR003759 InterPro:IPR004223 InterPro:IPR006158 InterPro:IPR011822 LENGTH 1232 SQ:AASEQ MSVKSPRITALKEQLIKRILILDGALGTMIQSYGLTEAEFRGDRFADWSCDLKGNNDLLALTQPQILREIHGNYLAAGADIIETNTFNATRIAMADYRMEELAVEINQTAAQLAREMADDMTAKTPDRPRFVAGVLGPTNRTASISPDVNDPGFRNTSFDELVAAYTESIRGLIQGGTDILLVETIFDTLNAKAAVYAIEQYFEDHQIRFPVMISGTITDASGRTLSGQTTEAFWNSLRHAEPLAFGLNCALGPKQLRQYVEELAGLADTHVAAHPNAGLPNEFGGYDETPEEMAQEIGEWAQAGFLNIVGGCCGTTPEHIRAIREAVEKHPPRKIPQRPVACRLSGLEPSNIDADSLFVNVGERTNITGSAKFRRLIKEEDYETALEVARQQVESGAQIIDINMDEGLLDSQKAMVRFLNLIAVEPDISRVPVMIDSSKWEIIEAGLKCIQGKGIVNSISLKEGEEPFLQQAKQVRRYGAAAVIMAFDEQGQAETTERKVGICARAYQLLTEKIGFPAEDIIFDPNIFAVATGIEEHNNYGVTYIEAAREIKRTLPPALVSGGVSNVSFSFRGNEKVREAIHAVFLYHAIQAGMDMGIVNAGQLAVYDEIDQDLRERVEDVILNRHPEATERLLEIAEKYRGAGGEAAERKEDLAWRELPVNERLAHALVKGIIDFVEADTEEARLAAKRPLDVIEGPLMDGMNVVGDLFGSGKMFLPQVVKSARVMKKAVAYLLPFMENEKESYKSHGKVVLATVKGDVHDIGKNIVAVVLQCNSFEVIDLGVMVPAEKILQTAKEESCDFVGLSGLITPSLDEMVHVAKEMERQNFDLPLLIGGATTSKMHTAVRIEPQYSQPVVYVPDASRVVGVAQRLLNPSLKAEYAAEITEEYGQMRRRRTEQQTERSHTPLPQARANKLKTDWTAYVPPRPTFLGLKSFADYPLEELTARIDWTPFFHAWELAGKYPRILKDEVVGEEARKLLKDAQALLKQVLEEKWLEARAVIGFFPANTVNEDDIELYTDESRQEVLTTLHHIRQQMVRRSGQPNYCLADYVAPKETGVADYIGAFAVTAGLGIDERLEEFARQYDDYNSILLKAIADRLAEAFAECMHERVRKEFWHYAPDEALTNEELISENYRGVRPAPGYPACPDHTEKATLWQLIEPDKNAGIILTESYAMVPTAAVSGWYFPHPESRYFGTGKIQKDQVKDYARRKGISVEQVERWLRSILGYEI GT:EXON 1|1-1232:0| BL:SWS:NREP 1 BL:SWS:REP 5->1231|METH_ECOLI|0.0|65.4|1224/1227| SEG 561->572|vsggvsnvsfsf| SEG 894->904|rrrrteqqter| SEG 977->992|arkllkdaqallkqvl| BL:PDB:NREP 2 BL:PDB:REP 15->528|1q7zA|3e-49|29.6|463/559| BL:PDB:REP 657->1231|3bulA|0.0|61.4|572/577| RP:PDB:NREP 2 RP:PDB:REP 1->623|3bolB|2e-82|25.7|549/549| RP:PDB:REP 656->1230|3bulA|6e-89|61.4|572/577| RP:PFM:NREP 5 RP:PFM:REP 19->328|PF02574|2e-84|58.4|291/296|S-methyl_trans| RP:PFM:REP 382->552|PF00809|7e-19|39.6|164/208|Pterin_bind| RP:PFM:REP 662->743|PF02607|1e-25|64.6|82/84|B12-binding_2| RP:PFM:REP 753->841|PF02310|1e-22|56.2|89/117|B12-binding| RP:PFM:REP 1062->1196|PF02965|2e-56|72.4|134/137|Met_synt_B12| HM:PFM:NREP 5 HM:PFM:REP 19->329|PF02574|7.6e-101|43.1|297/305|S-methyl_trans| HM:PFM:REP 1061->1196|PF02965|3.3e-50|46.3|134/136|Met_synt_B12| HM:PFM:REP 359->571|PF00809|4.5e-47|31.6|196/210|Pterin_bind| HM:PFM:REP 661->742|PF02607|6.4e-34|54.9|82/84|B12-binding_2| HM:PFM:REP 751->845|PF02310|1.7e-23|38.9|95/121|B12-binding| GO:PFM:NREP 11 GO:PFM GO:0008898|"GO:homocysteine S-methyltransferase activity"|PF02574|IPR003726| GO:PFM GO:0042558|"GO:pteridine and derivative metabolic process"|PF00809|IPR000489| GO:PFM GO:0008705|"GO:methionine synthase activity"|PF02607|IPR003759| GO:PFM GO:0009086|"GO:methionine biosynthetic process"|PF02607|IPR003759| GO:PFM GO:0031419|"GO:cobalamin binding"|PF02607|IPR003759| GO:PFM GO:0046872|"GO:metal ion binding"|PF02607|IPR003759| GO:PFM GO:0031419|"GO:cobalamin binding"|PF02310|IPR006158| GO:PFM GO:0046872|"GO:metal ion binding"|PF02310|IPR006158| GO:PFM GO:0005622|"GO:intracellular"|PF02965|IPR004223| GO:PFM GO:0008705|"GO:methionine synthase activity"|PF02965|IPR004223| GO:PFM GO:0009086|"GO:methionine biosynthetic process"|PF02965|IPR004223| RP:SCP:NREP 5 RP:SCP:REP 10->341|1q7mA2|3e-57|32.5|292/300|c.1.26.1| RP:SCP:REP 362->609|1f6yA|4e-45|23.5|230/258|c.1.21.2| RP:SCP:REP 656->743|1bmtA1|7e-34|73.9|88/90|a.46.1.1| RP:SCP:REP 751->893|1bmtA2|1e-08|68.5|143/156|c.23.6.1| RP:SCP:REP 908->1231|1k7yA3|e-127|58.6|321/327|d.173.1.1| HM:SCP:REP 7->402|1umyA_|2.9e-127|51.3|355/0|c.1.26.1|1/1|Homocysteine S-methyltransferase| HM:SCP:REP 359->634|1f6yA_|6.2e-94|46.4|261/0|c.1.21.2|1/1|Dihydropteroate synthetase-like| HM:SCP:REP 654->743|1bmtA1|6.5e-30|47.8|90/90|a.46.1.1|1/1|Methionine synthase domain| HM:SCP:REP 744->899|1bmtA2|2.9e-48|42.3|156/156|c.23.6.1|1/1|Cobalamin (vitamin B12)-binding domain| HM:SCP:REP 904->1233|1mskA_|1.1e-135|55.7|327/327|d.173.1.1|1/1|Methionine synthase activation domain-like| OP:NHOMO 1251 OP:NHOMOORG 761 OP:PATTERN ----1-----------2------2--------14---12111-11----8EAB-----------1-22 33511-11111-1-11122-211111222221111111111111----1-1-121-----111-1122111----------31--11-443311-----2-2-21221-1---------------1111111111112211---2111111111111111111111111121111111111111111122-1222222222222222222233322232222-1-1111113211111111111111111112-1-----1-1-12-----1-1-----222-----22------------------------1--111----3413422222221213233111-112-112111JR3212211D11141112-12222-----111111111111111111111111121111111162-41111141114411222322555564211111111111121-1-----------------------------222222111112222222-222222222222222222222222222222222222111111111-------111111-6632221111111-2321222221111132-1-------------------11-11--1112111-1221111111111111111111---1111------221112-1111111111-111111111111111111112111--1111111111111111121111111--111111111111---1---------11121----11---------11111-111111111111111111111111--------1111111111211112232222222-----111111111------------------------------------1-11111111121 ----111-31----11-1---------------------------------------------11------1---------111-1-----------------111-131B2122321111111221214C1-12511111111111211211213123118155111--A-131-111I1113-424214-1121212 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1218 STR:RPRED 98.9 SQ:SECSTR cccHHHHHHHHHHHHHHccEEcccccHHHHGGGTccccG#############cccGGGHHHHcHHHHHHHHHHHHHHTccEEEcccTTccHHHHGGGTcGGGHHHHHHHHHHHHHHHHTcccEEEHHTTcEEEEEEcccccccTTHHHTTcTTTccccHHHHHHHHHHHHHHHHHHTcccEEEEEEccHHHHHHHHHHHHHHcccccEEEccEEEEEcccTTcccTTcccHHHHHHHHHTccccEEEEEccccHHHHHHHHHHHHTTcccEEEEEccccccTTEccccccHHHHHTTHHHHHTTTcccEEcccTTccHHHHHHHHHHHccccccccccccccEEEcEEccccEEEccccEEEEEEEccTTcHHHHHHHHTTccHHHHHHHHHHHHTTccEEEEEcccGGGccHHHHHHHHHHHHHHTccTcccEEEEcccHHHHHHHHHHcccccEEEEEEcEccHHHHHHHHHHHHHHccEEEEEcccccccccHHHHHHHHHHHHHHHHHHTTTTcTTcEEEEcccccGGGTccccTccHHHHHHHHHHHHHTTccccccGGGTTccccHHHHcTTHHHHHHHHHHHHHHTTccEEEEcTTcHHHHHHHHHHHHHTTccccTTccTTTccccccccccccccHHHHHHHHHHHGGGGccHHHHHHHHHHHTccTTHHHHHHHHHHHcccTTHHHHTHHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHTcccccccccEEEEEEcTTccccHHHHHHHHHHHTTTcEEEEccccccHHHHHHHHHHHTccEEEEEcccTHHHHHHHHHHHHHHHTTccccEEEEcTTccHHHHHHHTGGGccccEEEcccHHHHHHHHHHHTcTTTHHHHHHHHHHHHHHHHHHTTccTTccccccHHHHHHTcccccGGGccccccccccEEEEEEccHHHHHTTcccHHHHHHTTccccTTGGGGcTTTHHHHHHHHHHHHHHHHHHHHHTccccEEEEEEEEEEEETTTEEEEEccTTcccEEEEEEccccccccccccccccGGGGcccGGGTccEEEEEEEEEccTTHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccTTccccHHHHHTTccccccccTTcTTcccGGGHHHHHHHHTHHHHHccEEcTTccEEcccEEEEEEcccTTccccccccccHHHHHHHHHHTTccHHHHHHHTGGGcccc# DISOP:02AL 1-10, 643-659, 737-751, 887-910| PSIPRED ccccccHHHHHHHHHHcccEEEEccHHHHHHHccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccccccccccccEEEcccEEEEEccccccEEccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHEEEccccccccccHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHHHHHccccHHHEEEcccHHHEEcccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccEEEEHHHHHccHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHccccccccEEEEccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcEEEcccEEEEEcccccccccccccccccccccccccccEEEEEEEccccccccEEEcEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccEEcHHHHccccHHHcEEEEEcccccEEccccccHHHHHHHHHHccccHHHHHHHHHHHccccc 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