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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57717.1
DDBJ      :             ATP-dependent DNA helicase RecG
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  880/915 : Eukaryota  20/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.37.1
:712 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   25->677 1gm5A PDBj e-101 39.5 %
:RPS:PDB   27->68 3bqsB PDBj 2e-04 16.7 %
:RPS:PDB   68->154 3dm3A PDBj 2e-06 27.1 %
:RPS:PDB   238->649 3bxzB PDBj 2e-38 13.1 %
:RPS:SCOP  25->195 1gm5A2  b.40.4.9 * 1e-24 24.3 %
:RPS:SCOP  199->473 1gm5A3  c.37.1.19 * 6e-80 44.4 %
:RPS:SCOP  472->661 2eyqA5  c.37.1.19 * 3e-39 34.6 %
:HMM:SCOP  18->197 1gm5A2 b.40.4.9 * 5.8e-40 35.4 %
:HMM:SCOP  199->473 1gm5A3 c.37.1.19 * 4.2e-63 36.7 %
:HMM:SCOP  472->673 2eyqA5 c.37.1.19 * 1.3e-44 33.7 %
:RPS:PFM   313->352 PF00270 * DEAD 4e-04 52.5 %
:RPS:PFM   539->606 PF00271 * Helicase_C 6e-07 32.8 %
:HMM:PFM   290->451 PF00270 * DEAD 5.1e-22 27.9 147/167  
:HMM:PFM   539->607 PF00271 * Helicase_C 1.2e-16 32.4 68/78  
:HMM:PFM   101->152 PF01336 * tRNA_anti 1e-06 26.9 52/76  
:HMM:PFM   29->65 PF11731 * Cdd1 0.00069 27.0 37/93  
:BLT:SWISS 28->709 RECG_ECOLI 0.0 54.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57717.1 GT:GENE ABA57717.1 GT:PRODUCT ATP-dependent DNA helicase RecG GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 1329485..1331623 GB:FROM 1329485 GB:TO 1331623 GB:DIRECTION + GB:PRODUCT ATP-dependent DNA helicase RecG GB:PROTEIN_ID ABA57717.1 GB:DB_XREF GI:76883036 InterPro:IPR001410 InterPro:IPR001650 InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR006935 InterPro:IPR011545 LENGTH 712 SQ:AASEQ MPLSILTSEKPCSLESRGNPNPLALDTPVTALKGVGPSLANRLARLGLCKVQDLLFHLPQRYQDRTRVAPIGTLQKGREALIEGEIQLCELRPGRRRSLLCSLSDGTGQIFLRFFHFSAWQQNSLTPGARVCCFGELRQGAAGLEMVHPDYRCLPEDRPTVTETYLTPVYPATEGLRQSSLRDLIQGVFKDLGEEGIIDYLPSGLLEGVGLPTLNEALIYLHQPPPDAPLNLLAEGKHPAQQRLAFEELLAHHLSLRQLHLRASRLQAPLLSSEGQLQQRFLATLPFPLTAAQSQVVQEILADMAQESPMQRLLQGDVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQGWFCPFEIRVEWLTAKRTTKARRESLERLEGGETPVAVGTHALFQEGVNFHKLGLVVVDEQHRFGVEQRLALREKGRYGNCCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVVARVRRACREGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELCIGLIHGRMKTQEKERAMAAFKSGDFHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSYCVLLYHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVANLMRDQELLVSVGQVADRFQQRYPAQVASLIRRWLGEESRYGEV GT:EXON 1|1-712:0| BL:SWS:NREP 1 BL:SWS:REP 28->709|RECG_ECOLI|0.0|54.8|679/693| SEG 380->391|rreslerlegge| SEG 481->503|avasdrrrdevvarvrracregr| SEG 513->537|eesdslqaqaaeesaaelaealpel| BL:PDB:NREP 1 BL:PDB:REP 25->677|1gm5A|e-101|39.5|617/729| RP:PDB:NREP 3 RP:PDB:REP 27->68|3bqsB|2e-04|16.7|42/83| RP:PDB:REP 68->154|3dm3A|2e-06|27.1|85/98| RP:PDB:REP 238->649|3bxzB|2e-38|13.1|397/440| RP:PFM:NREP 2 RP:PFM:REP 313->352|PF00270|4e-04|52.5|40/167|DEAD| RP:PFM:REP 539->606|PF00271|6e-07|32.8|67/76|Helicase_C| HM:PFM:NREP 4 HM:PFM:REP 290->451|PF00270|5.1e-22|27.9|147/167|DEAD| HM:PFM:REP 539->607|PF00271|1.2e-16|32.4|68/78|Helicase_C| HM:PFM:REP 101->152|PF01336|1e-06|26.9|52/76|tRNA_anti| HM:PFM:REP 29->65|PF11731|0.00069|27.0|37/93|Cdd1| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 3 RP:SCP:REP 25->195|1gm5A2|1e-24|24.3|169/180|b.40.4.9| RP:SCP:REP 199->473|1gm5A3|6e-80|44.4|259/259|c.37.1.19| RP:SCP:REP 472->661|2eyqA5|3e-39|34.6|182/211|c.37.1.19| HM:SCP:REP 18->197|1gm5A2|5.8e-40|35.4|175/0|b.40.4.9|1/1|Nucleic acid-binding proteins| HM:SCP:REP 199->473|1gm5A3|4.2e-63|36.7|264/264|c.37.1.19|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 472->673|2eyqA5|1.3e-44|33.7|193/0|c.37.1.19|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1783 OP:NHOMOORG 900 OP:PATTERN -------------------------------------------------------------------- 2222222222222221222-22222222222222222222222222222222222222222222222222221222222221211222222232222--2222222222211111111111111122222222222222222222222222222222222222222222222222222222222222222222233333233333322322222233322222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222232222222222222222223222222222222222222222122222121222222222222222222222223332222222222222222222-33333333222222222222322222222222223322222222222222222222222222211--2212222222222111112222222222222222222222222222222232222222222232222222232222222222222222222322211111111111111222222222222221111222322222222222222222222222222222222222222222322222222221-22222-1111122222222222222222-22222222222222222222222222222222222222222222222222221222222222222--22222222222222223222222222222222222322222222222222222222222222222222222222222222223222222222222222221222222222222222222---1---------------------2222222222212 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1-1-12A2221-1223-22111---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 686 STR:RPRED 96.3 SQ:SECSTR ########################ccccGGGcTTccHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHEEcGGGccccEEEEEEEEEEEEEEEEEEEcTEEEEEEETTEEEEEEEEEEGGGGGccccTTcEEEEEEEEEEcTTcEEEEEEEEEEEccccccccc##EEEEETTTTEEEEEETTTccEEEcccTTcEEEcTTccEEEEEEEccccccEEEEEETTTccccEEEEGGGccHHHHTTccHHHHHTHHHHHHHHHHTTccGGGcHHHHHccHHHHHHHHHHTcccccHHHHHHHHHTTTcTTccTTEEEEccTTccHHHHTHHHHHHHTTccccEEEEEccHHHHHHHHHTTHHHHHHTTccEEEccHHHHHHHccEEEEEHHHHHHHHHHHHTcccGGGcccccccEEEEETHHHHHTTcccccEEccTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcccEEEccHHHHHHHHHHHHHHHHHHTccEEEEEEEEEEEcccHHHHHHHHHHHHHTcccccEEccccHHHHHHHHTTTTccccEEEEcTTccTTccccTTccTHHHHTTcccccTTTTHHHHTTHHHHHHHHHHTTccEEEEccccccccGGGcccEEEEEEEHHHHcccHHHHHTTccHHHHGGGHHHccHHHHHTcccccHHHHHHHHHHcccccHHHHHHHHHcGGGTTc DISOP:02AL 1-26, 260-272, 711-712| PSIPRED ccccccccccccHHccccccccccccccHHHccccHHHHHHHHHHcccccHHHHHHHccccEEcccccccHHHcccccEEEEEEEEEEEEEcccccEEEEEEEEEcccEEEEEEEcccHHHHHHcccccEEEEEEEEEEcccEEEEEccEEEEEccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccHHHHHHcccccHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHccccEEEEHHHHHHHHccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHccccHHHHccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEccccccEEEEEHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEEEEEEEccccccccEEEEEcccccccHHEEEEEcEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccc //