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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57726.1
DDBJ      :             ApbE-like lipoprotein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  488/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.96.2
:322 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   10->248 1vrmA PDBj 3e-31 36.1 %
:RPS:SCOP  2->284 1vrmA1  d.96.2.1 * 7e-68 31.9 %
:HMM:SCOP  2->292 1vrmA1 d.96.2.1 * 3.7e-83 38.8 %
:RPS:PFM   38->263 PF02424 * ApbE 6e-43 44.8 %
:HMM:PFM   39->283 PF02424 * ApbE 1.8e-64 38.1 244/252  
:BLT:SWISS 9->267 APBE_SALTY 8e-24 32.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57726.1 GT:GENE ABA57726.1 GT:PRODUCT ApbE-like lipoprotein GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 1341340..1342308 GB:FROM 1341340 GB:TO 1342308 GB:DIRECTION + GB:PRODUCT ApbE-like lipoprotein GB:PROTEIN_ID ABA57726.1 GB:DB_XREF GI:76883045 InterPro:IPR003374 LENGTH 322 SQ:AASEQ MKLYREAFKAMGTPCEIQLYAKTKVQAQRAAGLIIADVRRLEARYSRYRTDSFLSDINRVAMAGGRISVDKETEGLLNYAATCYGQSKGLFDITSGILRRAWDFKSGELPSRVQVQELLDKIGWEKLRWAPPVLEFPIAGMEIDFGGIVKEYAADRAASLSLQAGVRRGLVNLGGDIKVIGPRPDGEPWRIGIRHPGHKEAAMGMLLLHKGAIASSGDYERCIVLDGVRYGHVLNPQTGWPVRHLASVTVISDLCVVAGSASTIAMLKEANGSAWLQNLGLPHFWVNMEGETGGSLEEGSIEAVAMVQNSERQAAITVLNEY GT:EXON 1|1-322:0| BL:SWS:NREP 1 BL:SWS:REP 9->267|APBE_SALTY|8e-24|32.2|255/350| SEG 289->302|egetggsleegsie| BL:PDB:NREP 1 BL:PDB:REP 10->248|1vrmA|3e-31|36.1|233/304| RP:PFM:NREP 1 RP:PFM:REP 38->263|PF02424|6e-43|44.8|223/253|ApbE| HM:PFM:NREP 1 HM:PFM:REP 39->283|PF02424|1.8e-64|38.1|244/252|ApbE| GO:PFM:NREP 1 GO:PFM GO:0009228|"GO:thiamin biosynthetic process"|PF02424|IPR003374| RP:SCP:NREP 1 RP:SCP:REP 2->284|1vrmA1|7e-68|31.9|279/309|d.96.2.1| HM:SCP:REP 2->292|1vrmA1|3.7e-83|38.8|286/0|d.96.2.1|1/1|ApbE-like| OP:NHOMO 644 OP:NHOMOORG 491 OP:PATTERN -------------------------------------------------11----------------- 1-3-1-----------------------------------1-2---------------------1--1----------1232------1111-2111---131123-4-11------1111111111-1-112-2111111111--------------------------------------------11-2---------------------------------1111111-----------------11--21-144-1111331133-112-122211111-11111111111111111111111111111221112221112241111111-1-2111122-12111121--22---121--1111-1---21111-----1-11111212-1222222121221-11311211-1---------1---1-2-1-3-21211-11-------------11---------------------------------1-1-1-12-------2111----222212---1223--11222-2212-11-111111--112111111--211-11211111-311-----1---1-1111-111---------------------------222124212112222213422223322242--12112------11221221111111111-1111111111111111111222221111111111111111111211111111-111111111111---2---------22213111111111111111-------111121111111-111211111---------1111111111211111111111---11111111--------------111-------------------------1111111111-11 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 268 STR:RPRED 83.2 SQ:SECSTR #########ETTEEEEE#EEEcccccHHHHHHHHHHH#HHHHHHTccccTTcHHHHHHT##cccccEEccHHHHHHHHHHHHHHHHTTTcccTTTHHHHHHHTTTccccccHHHHHHHHTTccGGGEEEETTTEEEccTTcccccTTTHHHHHHHHHHHHHHHHcTTcEEEEETTEEEEEEccTTTccEEEEEEcTcTcccEEEEEEEcccEEEEEETTccEEEETTEEEEccccTTTccccccEEEEEEEEccHHHHHHHHHHHHHcHHHHHHHHHHHTc######################################### PSIPRED cEEEEEEEEEccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHcccccHHEEEcccEEEEEcccEEEEcccHHHHHHHHHHHHHHHHccccEEEEEcccEEEEEEcccccccEEEEEEccccccccEEEEEEcccEEEEccccccEEEEccEEEEEEEcccccccccccEEEEEEcccccHHHHHHHHHHHcHHHHHHHHHHccccEEEEcccccEEEEccccccHHHHHHHcccccEEccccccc //