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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57802.1
DDBJ      :             RNA binding S1
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  730/915 : Eukaryota  130/199 : Viruses  0/175   --->[See Alignment]
a.294.1a.60.2b.40.4c.55.3
:765 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->720 2oceA PDBj 0.0 61.8 %
:RPS:PDB   1->717 3bzcA PDBj e-142 60.1 %
:RPS:SCOP  4->317 2oceA3  a.294.1.1 * 7e-89 51.0 %
:RPS:SCOP  318->466 2oceA5  c.55.3.13 * 2e-36 64.4 %
:RPS:SCOP  467->556 2oceA1  a.60.2.6 * 6e-20 61.1 %
:RPS:SCOP  557->628 2oceA2  a.60.2.6 * 2e-28 73.6 %
:RPS:SCOP  630->717 2oceA4  b.40.4.5 * 9e-20 73.9 %
:HMM:SCOP  634->723 1wi5A_ b.40.4.5 * 2e-25 45.6 %
:RPS:PFM   7->199 PF09371 * Tex_N 2e-47 57.5 %
:RPS:PFM   645->715 PF00575 * S1 2e-13 47.9 %
:HMM:PFM   7->197 PF09371 * Tex_N 5.4e-79 62.8 191/193  
:HMM:PFM   645->717 PF00575 * S1 4.9e-20 42.5 73/74  
:HMM:PFM   497->620 PF07969 * Amidohydro_3 3.9e-05 19.8 116/404  
:HMM:PFM   322->349 PF04312 * DUF460 0.001 46.2 26/138  
:BLT:SWISS 4->741 Y568_HAEIN 0.0 57.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57802.1 GT:GENE ABA57802.1 GT:PRODUCT RNA binding S1 GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 1446114..1448411 GB:FROM 1446114 GB:TO 1448411 GB:DIRECTION + GB:PRODUCT RNA binding S1 GB:PROTEIN_ID ABA57802.1 GB:DB_XREF GI:76883121 InterPro:IPR003029 InterPro:IPR006641 LENGTH 765 SQ:AASEQ MKSAEIIAQELEIQREQASAAICLLDEGATVPFVARYRKEATGGMDDTQLRYLESRLVYLRELEERRETIACSIEKQDKLTAELEQQLLAAMTKTELEDLYLPYKPKRRTKAQMAREAGLEPLALQLLENPELDPETIAADYLNPDKGIEEVSAALEGARRILMEHFAEEAGLLGQLREYLWKQGELRAKVQDGKGEQGCKFADYFDYQEAICKIPSHRALALFRGQNEGVLKLTLDTPAREGREEHPCEFMMAKHFGVREQGRPADAWLLQAVRWAWKIKLYPRLEADLKLRLREQAEETAIDVFSRNLRSLLLAAPAGPRPILGLDPGFRTGVKVAVIDETGKLLETATIYPHPPQKQWDAAIDILSSLLKKHRVELVGIGNGTASRETEQLVVELLKKFPQFELQKLLISEAGASVYSASAGAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQSQLGRALVGAVEDCVNAVGVDINTASPALLSYVSGFTSTVARNTVEYRDTHGPFASREGLKQIPRFGVKTFEQAAGFLRIRGGDNPLDASAVHPETYPVVQKIMAATGRDIHRLIGHSDFLNSLDPALFIDEQFGLPTFQDILRELEKPGRDPRPAFKTAAFKEEIQTLEDLKPGMILEGVATNVTAFGAFVDVGVHQDGLVHISALADRFVKDPHEIVSAGDIVKVKVLEVDNVRQRIGLTMRLGEMEEKQSSQLAAKGHMKKTRRSKAKLPPTVQGGAMAEAFSRAKKST GT:EXON 1|1-765:0| BL:SWS:NREP 1 BL:SWS:REP 4->741|Y568_HAEIN|0.0|57.3|736/762| SEG 50->68|lrylesrlvylreleerre| SEG 82->91|aeleqqllaa| SEG 413->427|seagasvysasagaa| BL:PDB:NREP 1 BL:PDB:REP 24->720|2oceA|0.0|61.8|697/729| RP:PDB:NREP 1 RP:PDB:REP 1->717|3bzcA|e-142|60.1|717/730| RP:PFM:NREP 2 RP:PFM:REP 7->199|PF09371|2e-47|57.5|193/193|Tex_N| RP:PFM:REP 645->715|PF00575|2e-13|47.9|71/74|S1| HM:PFM:NREP 4 HM:PFM:REP 7->197|PF09371|5.4e-79|62.8|191/193|Tex_N| HM:PFM:REP 645->717|PF00575|4.9e-20|42.5|73/74|S1| HM:PFM:REP 497->620|PF07969|3.9e-05|19.8|116/404|Amidohydro_3| HM:PFM:REP 322->349|PF04312|0.001|46.2|26/138|DUF460| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 5 RP:SCP:REP 4->317|2oceA3|7e-89|51.0|314/323|a.294.1.1| RP:SCP:REP 318->466|2oceA5|2e-36|64.4|149/149|c.55.3.13| RP:SCP:REP 467->556|2oceA1|6e-20|61.1|90/90|a.60.2.6| RP:SCP:REP 557->628|2oceA2|2e-28|73.6|72/73|a.60.2.6| RP:SCP:REP 630->717|2oceA4|9e-20|73.9|88/94|b.40.4.5| HM:SCP:REP 634->723|1wi5A_|2e-25|45.6|90/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1572 OP:NHOMOORG 867 OP:PATTERN --------------------------------11----11111------------------------- 211-222111121221111-1211221111122222222212221---1---111---11221-12222211111111-12-1-----2111-1--1--1111--121-1--------------1111111111213223311-41111111--------------1111--------------1------143333333334333333444423333423444344444422122222222222222111123121221311133222233322-22222222222222222222222222222222222222122221112-1214222222232321331233133123112122232231-211--1111-4111111111222223112222211221121222-22222222221-2222222222222211-11222221221111111111111221------------------------1-----2211222222222222222222222222222222222212222222222222222222211222222222222222221311221122231121121212112131-21-------------------1---1--2232222322222222222222222222221-2222-11111122222222222222222-222222222222222222222222222222222222222222222222222212222222222221122111112222222222222222221222221112111323222222222222222222211111111112222222222222222333333333333--1---------------111------11--1----------1111-1111------1- --------211----1---111-111-------11--111111-----11111121-222111-1----111---21111----1-1---2------------211-14-32213212211221422412C2121322112122111212211212232221122322-161121-112A111--4121-11212---2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 726 STR:RPRED 94.9 SQ:SECSTR cHHHHHHHHHHTTcHHHHHHHHHHHHTTccHHHHHHHcHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHcccHHHHHHHHGGGccccccHHHHHHHTTTHHHHHHHHHcTTccHHHHHHTTcccccccccHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHcEEEEEEcGGGcGGGGGGGGGcEEEEEGGGccHHHHHHHHTccccccEEEEEEcccccTTcccHHHHHHHHHTTccccccccHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEccccccEEEEEEcTTccEEEEEEEcccGGGccHHHHHHHHHHHHHHHTccEEEEEccTTHHHHHHHHHHHHHHcGGGccEEEEEccHHHHHHHHcHHHHHHcTTccHHHHHHHHHHHHHHcHHHHHTTccGGGGTccTTGGGccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHHTcTTccHHHHHHHHHHHHHHcccccGGGGGGcTTccHHHHHHHGGGEEcTTcccGGGGccccGGGHHHHHHHHHHHTccHHHHTTcHHHHHHccGGGTccccccHHHHHHHHHHHHcTTccccccccTTTTcccccccTTccTTcccccEEEEEETTEEEEEcccccEEEEETTTccccccccHHHHccTTccccccEEEEETTTTEEEEcccHHHHHHHHH####################################### DISOP:02AL 194-198, 426-427, 716-753, 764-765| PSIPRED ccHHHHHHHHHcccHHHHHHHHHHHHccccccccEEEHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccEEEEEEEccccccccccccHHHHHHHHHHcccHHHHHHHccccccEEEEEEEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHcccccccEEEEccccccHHHccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHcccHHHHHHHHHHHHHHHHHHcEEEEEcccHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHcEEEEccccccccccEEcccccHHHHHHHHHHcccHHHHHccHHHHHHccHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccEEEEEEccccEEEEEEEEccccccccHHHEEccccEEEEEEEEEEccccEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccc //