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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57837.1
DDBJ      :             Peptidoglycan-binding LysM
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  5/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.7.1
:389 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   311->389 2djpA PDBj 6e-10 20.0 %
:RPS:SCOP  337->385 1e0gA  d.7.1.1 * 3e-09 28.6 %
:HMM:SCOP  333->386 1y7mA2 d.7.1.1 * 9.7e-05 37.5 %
:RPS:PFM   108->251 PF02535 * Zip 2e-05 25.5 %
:HMM:PFM   103->247 PF02535 * Zip 6.8e-09 19.6 143/319  
:HMM:PFM   337->384 PF01476 * LysM 1.3e-09 39.5 43/44  
:BLT:SWISS 318->384 YGAU_ECOLI 3e-05 31.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57837.1 GT:GENE ABA57837.1 GT:PRODUCT Peptidoglycan-binding LysM GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 1490807..1491976 GB:FROM 1490807 GB:TO 1491976 GB:DIRECTION + GB:PRODUCT Peptidoglycan-binding LysM GB:PROTEIN_ID ABA57837.1 GB:DB_XREF GI:76883156 InterPro:IPR002482 LENGTH 389 SQ:AASEQ MMGAATLLSLLKMQDFLIVFGLALLPALGNFVGGLWAEFLRTSERALNRALHAAAGIVLAIVAIELMPEALKSISPWMIALAFALGGFAYMALEAAIEYLQKKKGKNSSGSTAMWMLYGAVATDLFSDGLMIGAGSAVSPSMALILALGQVLADVPEGYAAIANFKDKNIPRRRRFWLSASFALPALTAATLAYFLLRDQNETLKMAGLVFTAGLLTVAAVEDMVSEAHEIAQDTRWSDFSFIGGFVLFILVSAGFKSYLIEEPESAVAAKAGAEALPALSVSETAKSGEKESLVTRLQERSREKDADMITRLPPTSATKKSQEKRALTSRLPKRLVVQHGDTLSQIAARLYGDPAQWRLLYAANRDRLDNPDLLRAGMELVVPLDSEK GT:EXON 1|1-389:0| BL:SWS:NREP 1 BL:SWS:REP 318->384|YGAU_ECOLI|3e-05|31.3|67/149| TM:NTM 6 TM:REGION 11->33| TM:REGION 48->70| TM:REGION 76->98| TM:REGION 121->143| TM:REGION 179->201| TM:REGION 240->262| SEG 50->64|alhaaagivlaivai| SEG 178->197|lsasfalpaltaatlayfll| SEG 267->279|avaakagaealpa| RP:PDB:NREP 1 RP:PDB:REP 311->389|2djpA|6e-10|20.0|65/77| RP:PFM:NREP 1 RP:PFM:REP 108->251|PF02535|2e-05|25.5|141/299|Zip| HM:PFM:NREP 2 HM:PFM:REP 103->247|PF02535|6.8e-09|19.6|143/319|Zip| HM:PFM:REP 337->384|PF01476|1.3e-09|39.5|43/44|LysM| GO:PFM:NREP 4 GO:PFM GO:0016020|"GO:membrane"|PF02535|IPR003689| GO:PFM GO:0030001|"GO:metal ion transport"|PF02535|IPR003689| GO:PFM GO:0046873|"GO:metal ion transmembrane transporter activity"|PF02535|IPR003689| GO:PFM GO:0055085|"GO:transmembrane transport"|PF02535|IPR003689| RP:SCP:NREP 1 RP:SCP:REP 337->385|1e0gA|3e-09|28.6|42/48|d.7.1.1| HM:SCP:REP 333->386|1y7mA2|9.7e-05|37.5|48/0|d.7.1.1|1/1|LysM domain| OP:NHOMO 10 OP:NHOMOORG 5 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------1-------------------------------------------------------------------------------------------1---1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------6----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 66 STR:RPRED 17.0 SQ:SECSTR ######################################################################################################################################################################################################################################################################################################################cccccccccccEE#########EEEEcccTTccHHHHHHHHTcc###HHHHHHHHc#TccccccGGGcccEEEEEEccc DISOP:02AL 1-2, 99-114, 291-334, 387-389| PSIPRED cHHHHHHHHHHEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHccccHHHHHHHHHcHHHcccccEEccccEEEEcccccc //