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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57908.1
DDBJ      :             Secretion protein HlyD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  395/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
d.3.1d.41.2f.46.1
:400 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   63->389 3h9tA PDBj 3e-10 24.7 %
:RPS:PDB   210->279 2ejmA PDBj 2e-10 15.7 %
:RPS:PDB   277->327 1e0bA PDBj 4e-06 5.9 %
:RPS:SCOP  93->130 1qpnA2  d.41.2.1 * 4e-04 23.7 %
:RPS:SCOP  145->393 1iu4A  d.3.1.8 * 5e-28 9.4 %
:HMM:SCOP  78->324 1vf7A_ f.46.1.1 * 2.7e-18 26.2 %
:RPS:PFM   94->274 PF00529 * HlyD 4e-05 32.6 %
:HMM:PFM   93->189 PF00529 * HlyD 7.2e-10 25.8 97/306  
:BLT:SWISS 49->398 CZCB_RALME 8e-84 44.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57908.1 GT:GENE ABA57908.1 GT:PRODUCT Secretion protein HlyD GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(1574716..1575918) GB:FROM 1574716 GB:TO 1575918 GB:DIRECTION - GB:PRODUCT Secretion protein HlyD GB:PROTEIN_ID ABA57908.1 GB:DB_XREF GI:76883227 InterPro:IPR006143 LENGTH 400 SQ:AASEQ MKNKTLLTVLSIIGMGLLLGWFILQMKTPSVNEKSTPSANQQAQTKTNSPGEKYIVLTPKAQQKAGIKVRAAGPAQIKTTLELPGEIQFNENRVAHVVPRVEGVITAAYKHLGAPVEKGELIAVLESRELADLKSQYYTAIKQRELAQITFAREARLWRERVSAEQDYLAAKTALAEADITVTAAAQRLLALGLTQESLDTIPKEGQSNLSRYPIRAPFNGRVVRKHVVRGEAVKADAELFMIADLSTVWGTITVYTEDLKQIHLGQKVTVKSEELGLEATGTIFYLGYLIDAQTRSTQAHVDIPNSEERWRPGLFVTVEVAEKKISVPVAVAAEAIQTYRSQPVVFVQHRNGFKARPITLGRRSGQWIEVVTGLSAGERYAADNSFVLKSELGEAMAPP GT:EXON 1|1-400:0| BL:SWS:NREP 1 BL:SWS:REP 49->398|CZCB_RALME|8e-84|44.6|341/520| BL:PDB:NREP 1 BL:PDB:REP 63->389|3h9tA|3e-10|24.7|287/296| RP:PDB:NREP 2 RP:PDB:REP 210->279|2ejmA|2e-10|15.7|70/99| RP:PDB:REP 277->327|1e0bA|4e-06|5.9|51/61| RP:PFM:NREP 1 RP:PFM:REP 94->274|PF00529|4e-05|32.6|181/259|HlyD| HM:PFM:NREP 1 HM:PFM:REP 93->189|PF00529|7.2e-10|25.8|97/306|HlyD| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 2 RP:SCP:REP 93->130|1qpnA2|4e-04|23.7|38/115|d.41.2.1| RP:SCP:REP 145->393|1iu4A|5e-28|9.4|235/331|d.3.1.8| HM:SCP:REP 78->324|1vf7A_|2.7e-18|26.2|221/237|f.46.1.1|1/1|HlyD-like secretion proteins| OP:NHOMO 1084 OP:NHOMOORG 397 OP:PATTERN -------------------------------------------------------------------- 537--------------------------------------------------------------------------------413413441-5------2626468A25--------------1---1--1--3----11------2-2111----------12-51311------------------------------------------------------------3--------------------------------------------------------------------------------------------51-2--------------------------3111331-1--1-------4115337-----1164973A528411111111111--48-163651-3-1--22121--2228334--1-------1111111112211111---------------1--------------2116-1-1-3234131133334431333312213455B-27851123372212-79426542--------336216--122231-12----463535424333365-31---1------1-1111111-2--156232635375225444343695566767A65---81-4-------222-212112222222-122223322212222222111111--11--1111111-111111221---21-2-------------15331223667642-----------------112211111-1422322122233214111---------4233122222232336343433222------1-331122--------------------------------------1-------14- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 327 STR:RPRED 81.8 SQ:SECSTR ##############################################################cccccccETTccEEccEEccTTccHHHHHHHHHHHHHHHGGGccHHHHHHcccEEEccccccEccccHHHHHHHHHHHTTHHHHHccccccEEEEccccEEEcHHHHHTHHHHTTTccccccTTcccccccccccccccHHHccccccccccccccccEEEEEEcccTTEEEccccEEEEEEccccEEEEEccccEEEEEEcccTTEEEcTTcccEEEEEEEEEEEEEETTEEEEEEEEEEEEEccccEEEEEEEEEEEETTEEEEEEEEEEEEEEEccccHHHHHHccccccccEEEEEEEETTEEEEEEEccccHHHHHHHcccc########### DISOP:02AL 1-2, 30-64, 391-400| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccEEEEccHHHccccEEEEEEEcEEEEEEEEEEEEEEEcccEEEEEEEccccEEEEEEcccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcEEEEccccEEEEEEEEccccEEcccccEEEEEEccEEEEEEEEcHHHHHHcccccEEEEEEcccccEEEEEEEEEEEEEcccccEEEEEEEEEccccccccccEEEEEEEEccccccEEccHHHEEEccccEEEEEEEccEEEEEEEEEEEEcccEEEEEEccccccEEEEEcHHHHccccccccccc //