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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA57987.1
DDBJ      :             Transposase
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  210/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
g.72.1
:397 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   96->205 3ee7B PDBj 1e-12 7.8 %
:RPS:PDB   265->350 3a43B PDBj 2e-04 15.7 %
:RPS:SCOP  299->351 1wj0A  g.72.1.1 * 4e-15 18.9 %
:RPS:PFM   1->46 PF12323 * HTH_14 9e-09 52.2 %
:RPS:PFM   72->279 PF01385 * Transposase_2 1e-35 40.4 %
:RPS:PFM   298->358 PF07282 * Transposase_35 8e-11 46.7 %
:HMM:PFM   69->277 PF01385 * Transposase_2 6.8e-42 28.9 204/227  
:HMM:PFM   291->359 PF07282 * Transposase_35 2.4e-25 43.3 67/69  
:HMM:PFM   1->46 PF12323 * HTH_14 5.4e-19 52.2 46/46  
:BLT:SWISS 3->352 YSNA_STRPR 2e-39 36.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA57987.1 GT:GENE ABA57987.1 GT:PRODUCT Transposase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 1664860..1666053 GB:FROM 1664860 GB:TO 1666053 GB:DIRECTION + GB:PRODUCT Transposase GB:PROTEIN_ID ABA57987.1 GB:DB_XREF GI:76883306 InterPro:IPR001959 InterPro:IPR010095 LENGTH 397 SQ:AASEQ MLKATKIRLYPTREQAEFLNRQFGSVRFCYNTGLRIMSHRYKRHGQSLSAKYDIKKLLPVAKKSRKYGWLKEADSVALAQACINLDKAFQRFFKEKKGYPRFKRKRGKQSSYHCMSVSCGESWVKVPKLGPIKARVHRSVEGKLKSITLSRTVTGKHYASLLYETEQPVPEPMTAIDATKVLGLDMGLSHLAIDSTGRKVANPRFIKQVQKNLKRKQQSLSRKQKGSSKRAKARLLVAKAHERVADARSDFQHKLSRQIVDDNQAVIVETLKVNNMMKNAKLAKHIGDASWHALIAKLAYKAKEQGKHLVKIDPWFASSKTCHVCQHKMDAMPLNIRSWACPTCHTRHDRDINAALNIQHQGILKLKAEGLSVSAHRGLRKSGMPPVAAVEVGSSVR GT:EXON 1|1-397:0| BL:SWS:NREP 1 BL:SWS:REP 3->352|YSNA_STRPR|2e-39|36.0|342/402| SEG 213->240|lkrkqqslsrkqkgsskrakarllvaka| RP:PDB:NREP 2 RP:PDB:REP 96->205|3ee7B|1e-12|7.8|103/115| RP:PDB:REP 265->350|3a43B|2e-04|15.7|83/117| RP:PFM:NREP 3 RP:PFM:REP 1->46|PF12323|9e-09|52.2|46/46|HTH_14| RP:PFM:REP 72->279|PF01385|1e-35|40.4|203/207|Transposase_2| RP:PFM:REP 298->358|PF07282|8e-11|46.7|60/70|Transposase_35| HM:PFM:NREP 3 HM:PFM:REP 69->277|PF01385|6.8e-42|28.9|204/227|Transposase_2| HM:PFM:REP 291->359|PF07282|2.4e-25|43.3|67/69|Transposase_35| HM:PFM:REP 1->46|PF12323|5.4e-19|52.2|46/46|HTH_14| RP:SCP:NREP 1 RP:SCP:REP 299->351|1wj0A|4e-15|18.9|53/58|g.72.1.1| OP:NHOMO 968 OP:NHOMOORG 233 OP:PATTERN ------1-7114--9--1------2--1323B-1---2----------215F3-----1---11---- ----1------------22-22----22222-1---2-76-18K------------------1---B3113----41----------1--------------------2---------------------------C-12----4-23Z4ID*CB11------21X39M25-------------28-----1A-33333-5C35331351-----2345111-D3------4----------------1----11-----9-H1--55---2---------------------------------------------------33---------2-4--922-53M35--4--11211A----2---1-1--7-----------------------------------------1-1--------------------------------111111111-----------------------------------------------B77-3B-------1-------1----1------------A1----------------------2----1--------------------------------------3-2-51----------2-----2----31--------4------------2H-------------3--12221-1-32-22132113132-3111111-------D---1---1--11211221111233------------------------------1-------------74---------1J5----------------------------------------------------1-32----------1115--1-------------------------------54-211-1D-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 186 STR:RPRED 46.9 SQ:SECSTR ###############################################################################################cEEEEEEEEccTcEEEEEEEEcccccc#EEEEEEEcccccEEEEcTTcccEEEEEccccEEEEEccTTccEEEEEEE#####cTTccHHHHHHHHHHHHccc#ccccccc###########################################################HHHHHHHHHTTccEEEEEEEEEETTccccHHHHHHHHHHHTTcTTTTcEEEEEEEccETTTccEE###ccccccccccccccccEE############################################### DISOP:02AL 220-230, 372-397| PSIPRED ccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEEEcccEEEEccccEEEEEEEEEccccccEEEEEEcccccEEEEEEEEEccccccccccccccEEEEEEccccEEEEEEccEEEccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccccccccccccccccccEEEEccccEEEEcHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEcccccc //