[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58021.1
DDBJ      :             Outer membrane efflux protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  44/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.5.1
:445 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   42->431 1ek9A PDBj 2e-26 12.7 %
:RPS:SCOP  39->431 1ek9A  f.5.1.1 * 6e-28 13.6 %
:HMM:SCOP  38->443 1ek9A_ f.5.1.1 * 1.3e-66 28.5 %
:RPS:PFM   48->216 PF02321 * OEP 3e-05 29.0 %
:HMM:PFM   42->217 PF02321 * OEP 9.2e-20 26.7 176/188  
:HMM:PFM   241->420 PF02321 * OEP 6.9e-29 25.1 179/188  
:BLT:SWISS 148->420 NODT_RHILT 2e-06 20.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58021.1 GT:GENE ABA58021.1 GT:PRODUCT Outer membrane efflux protein GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(1707773..1709110) GB:FROM 1707773 GB:TO 1709110 GB:DIRECTION - GB:PRODUCT Outer membrane efflux protein GB:PROTEIN_ID ABA58021.1 GB:DB_XREF GI:76883340 InterPro:IPR003423 LENGTH 445 SQ:AASEQ MFYSAHLSYELGLIAALVIAGTQVFASEPDPIAGQPRITVTQLVESVLSHHPGLKARQAALEAAEYRIAPAGALDDPTLSYSTAPDTLDSSRRFNQRLGLSQALPWPGKLALQKQAAQEEARAIAENEGALRLQVAAAAKTLFAEWFYVHRALTINRDHQALLQELRRIAEIQYAAGRAGQQDALQAEVAQARLEVKAVTLDRRRREVQARINALLNRPPQTRVPLPAGLPQLTTPLPRLAQLQMTALRAHPELARIRARIAGAKAQVGLAEKDFYPDFRVMAGYNSFWDDPAKRWTLGFSINLPFDYSNKRSAALDAARADLRQVRWRFTDREARLLGELEASRAAVEENEAVIKVYLRRLAPLAQDNLDAARADYRAGAGPFLNVIDAERQQLRTENGLARVRADYLRQLAQLEQWMGIPLDQLADSISAPAAPLPPAKEITP GT:EXON 1|1-445:0| BL:SWS:NREP 1 BL:SWS:REP 148->420|NODT_RHILT|2e-06|20.0|270/467| TM:NTM 1 TM:REGION 6->27| SEG 111->128|alqkqaaqeearaiaene| SEG 255->262|ariraria| SEG 314->324|aaldaaradlr| SEG 371->382|daaradyragag| SEG 432->440|apaaplppa| RP:PDB:NREP 1 RP:PDB:REP 42->431|1ek9A|2e-26|12.7|386/423| RP:PFM:NREP 1 RP:PFM:REP 48->216|PF02321|3e-05|29.0|169/189|OEP| HM:PFM:NREP 2 HM:PFM:REP 42->217|PF02321|9.2e-20|26.7|176/188|OEP| HM:PFM:REP 241->420|PF02321|6.9e-29|25.1|179/188|OEP| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF02321|IPR003423| GO:PFM GO:0006810|"GO:transport"|PF02321|IPR003423| RP:SCP:NREP 1 RP:SCP:REP 39->431|1ek9A|6e-28|13.6|390/428|f.5.1.1| HM:SCP:REP 38->443|1ek9A_|1.3e-66|28.5|403/428|f.5.1.1|1/1|Outer membrane efflux proteins (OEP)| OP:NHOMO 55 OP:NHOMOORG 44 OP:PATTERN -------------------------------------------------------------------- 2-1----------------------------------------------------------------------------------1--------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------1------------------------------------------------1----------------------------------------------------------------------------------------------1-------21---1----2-1------------111-2--1-111---1----121113112----11-1-----------------------------1------1-----------------------2-----------------------------------------------------------------------------------------------2------1211-1------------------------------------------1---------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 392 STR:RPRED 88.1 SQ:SECSTR ######################################HHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHGGGccEEEEEEcccccTTcEEEEEEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcEcTTTccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHGGGccEEEEEEEEccTTccccEEEEEEEEEEccccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH#HHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccHHHHHHHH############## DISOP:02AL 1-6, 429-445| PSIPRED cccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc //