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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58106.1
DDBJ      :             Protein of unknown function DUF107
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  142/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.40.12c.14.1
:459 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   36->260 3bppA PDBj 5e-29 37.2 %
:RPS:PDB   38->134 3bezD PDBj 4e-10 23.2 %
:RPS:PDB   396->452 3cp0A PDBj 1e-08 26.3 %
:RPS:SCOP  386->450 2exdA1  b.40.12.1 * 6e-12 33.8 %
:HMM:SCOP  10->214 1tg6A1 c.14.1.1 * 8e-26 25.3 %
:HMM:SCOP  384->455 2exdA1 b.40.12.1 * 2e-16 41.7 %
:RPS:PFM   67->192 PF01972 * SDH_sah 4e-04 32.8 %
:RPS:PFM   317->451 PF01957 * NfeD 4e-16 46.5 %
:HMM:PFM   315->452 PF01957 * NfeD 7.4e-36 34.8 138/144  
:BLT:SWISS 36->322 YQEZ_BACSU 2e-11 28.6 %
:BLT:SWISS 313->450 Y826_METJA 3e-04 27.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58106.1 GT:GENE ABA58106.1 GT:PRODUCT Protein of unknown function DUF107 GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 1825621..1827000 GB:FROM 1825621 GB:TO 1827000 GB:DIRECTION + GB:PRODUCT Protein of unknown function DUF107 GB:PROTEIN_ID ABA58106.1 GB:DB_XREF GI:76883425 InterPro:IPR002810 LENGTH 459 SQ:AASEQ MFTSKRYFWILGPLVCLFLGGAVPAQQNQNLTGAAFLLDVRGVIGPATSDYVQRAMARGSAEGAALIILRMDTPGGLDTAMREIIQDILASPVPVVGYIAPSGARAASAGTYIMYASHIAAMAPATNLGAATPVHLPMGGRLPEKTPPPGEGEEAGTSSEDTLTRKAINDAVAYIKGLAAQRGRNERWAEKAVREAASLSAQEALEMEVIDLIARDVSALLKRLDGRTVDVVGGEMTLQTTGMTVIPVEPNWRDRLLAIIANPNVAYILMLVGIYGLIFEMANPGFVLPGVVGTISLLLALYAFQVLPISSAGLALMLLGIAFMAAEIFVPSFGALGIGGVIAFVIGSVILLDTNVPGYDISWPLIVAAAVSSAGFLYMVLFLTARSQRRPVVSGREQMLGATGKVTAVSEDKITVRVHGELWSAQVREPVILGQRVRVMELEGLVLIVKPELEENLHD GT:EXON 1|1-459:0| BL:SWS:NREP 2 BL:SWS:REP 36->322|YQEZ_BACSU|2e-11|28.6|255/437| BL:SWS:REP 313->450|Y826_METJA|3e-04|27.8|126/100| TM:NTM 6 TM:REGION 7->27| TM:REGION 255->277| TM:REGION 281->303| TM:REGION 309->331| TM:REGION 336->358| TM:REGION 362->384| SEG 147->156|pppgegeeag| SEG 195->208|eaaslsaqealeme| BL:PDB:NREP 1 BL:PDB:REP 36->260|3bppA|5e-29|37.2|207/216| RP:PDB:NREP 2 RP:PDB:REP 38->134|3bezD|4e-10|23.2|95/471| RP:PDB:REP 396->452|3cp0A|1e-08|26.3|57/62| RP:PFM:NREP 2 RP:PFM:REP 67->192|PF01972|4e-04|32.8|119/207|SDH_sah| RP:PFM:REP 317->451|PF01957|4e-16|46.5|129/138|NfeD| HM:PFM:NREP 1 HM:PFM:REP 315->452|PF01957|7.4e-36|34.8|138/144|NfeD| RP:SCP:NREP 1 RP:SCP:REP 386->450|2exdA1|6e-12|33.8|65/72|b.40.12.1| HM:SCP:REP 10->214|1tg6A1|8e-26|25.3|186/0|c.14.1.1|1/1|ClpP/crotonase| HM:SCP:REP 384->455|2exdA1|2e-16|41.7|72/0|b.40.12.1|1/1|NfeD domain-like| OP:NHOMO 168 OP:NHOMOORG 166 OP:PATTERN 11--11-----------11211-1------------------------11111-1111111---1--- 111--------------------------------------------------------------------------------1-121-------------------------------------11-111-1--111111---11----------------------------------------11-----------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------11-111-----1------------1--1------------------------1--111-----1-1--111--------------------------------------------------------------1----1--1111111-----11111111-11111111--111------111-----1------------1111--11---111-11----111-1111-11111-11-------------------------------1-1---11----1-1----1-11-1----1111--------------------------------------------------------------------------------------------1111111111--11--------------------------1-11111-1-111111------------1---1-----111--------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 284 STR:RPRED 61.9 SQ:SECSTR ###################################EEEcccccTTcEEHHHHHHHHHHHHHcTEEEEEEEEEEccccHHHHHHHHHHHHHHHHTTccEEEEEEEEEETHHHHTTTTccEEEEcTTcEEEcccEEEEEEEcHHHHHHTTcccccccccGGGcccTHHHHHHHHHHHHHHHHHHTccHHHHHHHHHTccEEcHHHHHHTTcccEEcccHHHHHHHTTTcccccTTccccccccccEEEEccccHHHHHHHHHcc#####################################################################################################################################GGGGTTcEEEEEEccccccEEEETTEEEEEEEcTTcccTcEEEEEEEETTEEEEEEc####### DISOP:02AL 1-3, 25-30, 141-164, 449-459| PSIPRED cccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHcccEEEEcccHHHHHHHHccEEEEEcccEEEEEEccEEEEEEcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHccccEEEEEEHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcHHHHcccEEEEEEEcccccEEEEEEEEEEEEEccccccccEEEEEEEEccEEEEEEcccccccc //